<![CDATA[BOL: sockeye]]> https://bioinformaticsonline.com/bookmarks/view/31014/sockeye? https://bioinformaticsonline.com/bookmarks/view/31014/sockeye Fri, 17 Feb 2017 08:51:16 -0600 https://bioinformaticsonline.com/bookmarks/view/31014/sockeye <![CDATA[sockeye]]> This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D models. Ensembl-derived and imported sequences can be analyzed by using a suite of multiple and pair-wise alignment algorithms. The results of these comparative analyses are also displayed in the 3D environment of Sockeye. By using the Java3D API to visualize genomic data in a 3D environment, we are able to compactly display cross-sequence comparisons. This provides the user with a novel platform for visualizing and comparing genomic feature organization.

Address of the bookmark: http://www.bcgsc.ca/platform/bioinfo/software/sockeye/releases/1.3

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