<![CDATA[BOL: PBSuite: Software for Long-Read Sequencing Data from PacBio]]> https://bioinformaticsonline.com/bookmarks/view/31139/pbsuite-software-for-long-read-sequencing-data-from-pacbio? https://bioinformaticsonline.com/bookmarks/view/31139/pbsuite-software-for-long-read-sequencing-data-from-pacbio Mon, 27 Feb 2017 09:54:47 -0600 https://bioinformaticsonline.com/bookmarks/view/31139/pbsuite-software-for-long-read-sequencing-data-from-pacbio <![CDATA[PBSuite: Software for Long-Read Sequencing Data from PacBio]]> PBJelly - the genome upgrading tool. 
PBHoney - the structural variation discovery tool 

Both are contained within the PBSuite code found in downloads.

----- PBJelly -----
Read The Paper 
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. 

----- PBHoney -----
Read The Paper
http://www.biomedcentral.com/1471-2105/15/180/abstract

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

Address of the bookmark: https://sourceforge.net/projects/pb-jelly/

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