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	<title><![CDATA[BOL: Pacbio Long Reads Compatible Software and Tools]]></title>
	<link>https://bioinformaticsonline.com/bookmarks/view/31568/pacbio-long-reads-compatible-software-and-tools?</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/31568/pacbio-long-reads-compatible-software-and-tools</guid>
	<pubDate>Wed, 15 Mar 2017 14:19:01 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/31568/pacbio-long-reads-compatible-software-and-tools</link>
	<title><![CDATA[Pacbio Long Reads Compatible Software and Tools]]></title>
	<description><![CDATA[<p>The following software packages are known to be compatible with PacBio&reg; data, in addition to PacBio's own SMRT&reg; Analysis suite. All packages are believed to be open source or freely available for non-commercial use. See the individual project sites for up-to-date license information. A separate page lists&nbsp;<a href="http://pacb.com/community/partner_program/current_partners/">commercial software</a>.</p>
<p>Know of any other open source software for PacBio data?&nbsp;<a href="mailto:devnet@pacificbiosciences.com">Email us</a>.</p>
<p>Software categories:</p>
<ul>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#denovo">De novo assembly</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#svdetection">Structural Variations Detection</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#aligners">Reference-based alignment</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#variants">Consensus and variant calling</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#RNA">RNA analysis</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#basemods">Epigenetic base modifications and methylation</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#barcoding">Barcoding</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#browsers">Genome Browsers</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#qc">Run QC</a></li>
<li><a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software#frameworks">Frameworks and APIs</a></li>
</ul><p>Address of the bookmark: <a href="https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software" rel="nofollow">https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software</a></p>]]></description>
	<dc:creator>Archana Malhotra</dc:creator>
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