<![CDATA[BOL: SSPACE]]> https://bioinformaticsonline.com/bookmarks/view/32481/sspace? https://bioinformaticsonline.com/bookmarks/view/32481/sspace Fri, 05 May 2017 05:42:15 -0500 https://bioinformaticsonline.com/bookmarks/view/32481/sspace <![CDATA[SSPACE]]> SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By using the distance information of paired-end and/or matepair data, SSPACE is able to assess the order, distance and orientation of your contigs and combine them into scaffolds. Currently we offer this as a command-line tool in Perl. The input data is given by pre-assembled contig sequences (FASTA) and NGS paired-read data (Illumina/454/Solid FASTA or FASTQ). The final scaffolds are provided in FASTA format.

 

Address of the bookmark: https://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE

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