<![CDATA[BOL: Barrnap: Bacterial ribosomal RNA predictor]]> https://bioinformaticsonline.com/bookmarks/view/32631/barrnap-bacterial-ribosomal-rna-predictor? https://bioinformaticsonline.com/bookmarks/view/32631/barrnap-bacterial-ribosomal-rna-predictor Fri, 12 May 2017 09:24:41 -0500 https://bioinformaticsonline.com/bookmarks/view/32631/barrnap-bacterial-ribosomal-rna-predictor <![CDATA[Barrnap: Bacterial ribosomal RNA predictor]]> Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. NHMMER binaries for 64-bit Linux and Mac OS X are included and will be auto-detected. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs. 

Address of the bookmark: https://github.com/tseemann/barrnap

]]> Abhimanyu Singh