<![CDATA[BOL: npScarf: Scaffolding and Completing Assemblies in Real-time Fashion]]> https://bioinformaticsonline.com/bookmarks/view/32943/npscarf-scaffolding-and-completing-assemblies-in-real-time-fashion? https://bioinformaticsonline.com/bookmarks/view/32943/npscarf-scaffolding-and-completing-assemblies-in-real-time-fashion Tue, 23 May 2017 04:53:29 -0500 https://bioinformaticsonline.com/bookmarks/view/32943/npscarf-scaffolding-and-completing-assemblies-in-real-time-fashion <![CDATA[npScarf: Scaffolding and Completing Assemblies in Real-time Fashion]]> npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands).

Complete paper at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321748/

Address of the bookmark: https://github.com/mdcao/npScarf

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