<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: GeneProf: analysis of high-throughput sequencing experiment]]></title>
	<link>https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment?</link>
	<atom:link href="https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment?" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</guid>
	<pubDate>Wed, 05 Jul 2017 16:47:05 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/33826/geneprof-analysis-of-high-throughput-sequencing-experiment</link>
	<title><![CDATA[GeneProf: analysis of high-throughput sequencing experiment]]></title>
	<description><![CDATA[<div>GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data!</div>
<p>Some of GeneProf's highlights include:</p>
<ul>
<li><strong>Easy-to-use web-based interface:</strong>Access your data at any time from any computer with a working internet connection -- no need to install software! (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_introduction.jsp#section:SystemRequirements">Section 'System Requirements'</a>).</li>
<li><strong>Analysis wizards make your life easy:</strong>Step-by-step workflows make it easy to analyse high-throughput data within a minimum of hands-on time. (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#subconcept:AnalysisWizards">SubConcept 'Analysis Wizards'</a>).</li>
<li><strong>Versatile modules:</strong>Advanced users and data analysis experts benefit from GeneProf's broad range of analysis modules, which can be combined freely into sophisticated workflows (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_conceptsexplained.jsp#concept:Workflows">Concept 'Workflows'</a>).</li>
<li><strong>Integrated Analysis:</strong>Analysis of&nbsp;<em>ChIP-seq</em>&nbsp;and&nbsp;<em>RNA-seq</em>&nbsp;data in one place, plus support for the integration of other external data (e.g. from microarrays).</li>
<li><strong>Comprehensive Resource:</strong>GeneProf provides a comprehensive resource of&nbsp;<em>fully analyzed</em>&nbsp;next-generation sequencing data. Experimental results can be easily accessed and compared and the analysis procedures employed to produce the data are fully transparent (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_tutorials.jsp#tutorial:ExaminingPublicNext-GenDatausingGeneProf">Tutorial 'Examining Public Next-Gen Data..'</a>).</li>
<li><strong>Extensibility:</strong>Algorithm developers and computer programmers can develop their own modules and extend GeneProf. Existing software can be easily wrapped in the workflow framework (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:ModuleDevelopment:AddingnewFunctionalitytoGeneProf">Section 'Module Development: Adding new..'</a>) and data from GeneProf may be used externally (cp.&nbsp;<a href="https://www.geneprof.org/GeneProf/help_advancedtopics.jsp#section:WebAPI:RetrievingDatafromGeneProf">Section 'Web API: Retrieving Data from ..'</a>).</li>
</ul>
<p>&nbsp;</p>
<p>GeneProf is academic software developed at the&nbsp;<a href="http://www.crm.ed.ac.uk/">Centre for Regenerative Medicine</a>&nbsp;/&nbsp;<a href="http://www.crm.ed.ac.uk/about/institute-stem-cell-research">Institute for Stem Cell Research</a>,&nbsp;<a href="http://www.ed.ac.uk/">University of Edinburgh</a>&nbsp;and has benefited from funding by the&nbsp;<a href="http://www.mrc.ac.uk/">Medical Research Council</a>&nbsp;and the&nbsp;<a href="http://www.eurosystemproject.eu/">EU Framework 7 Project "EuroSyStem"</a>.</p><p>Address of the bookmark: <a href="https://www.geneprof.org/GeneProf/index.jsp" rel="nofollow">https://www.geneprof.org/GeneProf/index.jsp</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

</channel>
</rss>