<![CDATA[BOL: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data]]> https://bioinformaticsonline.com/bookmarks/view/34292/automatic-filtering-trimming-error-removing-and-quality-control-for-fastq-data? https://bioinformaticsonline.com/bookmarks/view/34292/automatic-filtering-trimming-error-removing-and-quality-control-for-fastq-data Mon, 13 Nov 2017 05:10:23 -0600 https://bioinformaticsonline.com/bookmarks/view/34292/automatic-filtering-trimming-error-removing-and-quality-control-for-fastq-data <![CDATA[Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data]]> Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.
Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats

Address of the bookmark: https://github.com/OpenGene/AfterQC

]]> Rahul Nayak