<![CDATA[BOL: ONT assembly and Illumina polishing pipeline]]> https://bioinformaticsonline.com/bookmarks/view/34398/ont-assembly-and-illumina-polishing-pipeline? https://bioinformaticsonline.com/bookmarks/view/34398/ont-assembly-and-illumina-polishing-pipeline Thu, 23 Nov 2017 10:13:42 -0600 https://bioinformaticsonline.com/bookmarks/view/34398/ont-assembly-and-illumina-polishing-pipeline <![CDATA[ONT assembly and Illumina polishing pipeline]]> This pipeline performs the following steps:

  • Assembly of nanopore reads using Canu.
  • Polish canu contigs using racon (optional).
  • Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA mem.
  • Perform correction of contigs using pilon and the Illumina dataset.

Address of the bookmark: https://github.com/nanoporetech/ont-assembly-polish

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