<![CDATA[BOL: HiC-Pro: an optimized and flexible pipeline for Hi-C data processing]]> https://bioinformaticsonline.com/bookmarks/view/34525/hic-pro-an-optimized-and-flexible-pipeline-for-hi-c-data-processing? https://bioinformaticsonline.com/bookmarks/view/34525/hic-pro-an-optimized-and-flexible-pipeline-for-hi-c-data-processing Wed, 06 Dec 2017 01:05:21 -0600 https://bioinformaticsonline.com/bookmarks/view/34525/hic-pro-an-optimized-and-flexible-pipeline-for-hi-c-data-processing <![CDATA[HiC-Pro: an optimized and flexible pipeline for Hi-C data processing]]> HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocols, including digestion protocols as well as protocols that do not require restriction enzyme such as DNase Hi-C. In practice, HiC-Pro can be used to process dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data.

 

http://nservant.github.io/HiC-Pro/

Address of the bookmark: http://nservant.github.io/HiC-Pro/

]]> Jit