<![CDATA[BOL: Harvest: a suite of core-genome alignment and visualization tools]]> https://bioinformaticsonline.com/bookmarks/view/34562/harvest-a-suite-of-core-genome-alignment-and-visualization-tools? https://bioinformaticsonline.com/bookmarks/view/34562/harvest-a-suite-of-core-genome-alignment-and-visualization-tools Fri, 08 Dec 2017 07:16:03 -0600 https://bioinformaticsonline.com/bookmarks/view/34562/harvest-a-suite-of-core-genome-alignment-and-visualization-tools <![CDATA[Harvest: a suite of core-genome alignment and visualization tools]]> Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees.

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Tools

  • Parsnp - Core-genome alignment and analysis
  • Gingr - Interactive visualization of alignments, trees and variants
  • HarvestTools - Archiving and postprocessing

Address of the bookmark: https://harvest.readthedocs.io/en/latest/

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