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	<title><![CDATA[BOL: HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution]]></title>
	<link>https://bioinformaticsonline.com/bookmarks/view/35540/hinge-long-read-assembly-achieves-optimal-repeat-resolution?</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/35540/hinge-long-read-assembly-achieves-optimal-repeat-resolution</guid>
	<pubDate>Wed, 07 Feb 2018 09:40:22 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/35540/hinge-long-read-assembly-achieves-optimal-repeat-resolution</link>
	<title><![CDATA[HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution]]></title>
	<description><![CDATA[<p>Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"</p>
<ul>
<li>
<p>Preprint:&nbsp;<a href="http://biorxiv.org/content/early/2016/08/01/062117">http://biorxiv.org/content/early/2016/08/01/062117</a></p>
</li>
<li>
<p>Paper:&nbsp;<a href="http://genome.cshlp.org/content/27/5/747.full">http://genome.cshlp.org/content/27/5/747.full</a></p>
</li>
<li>
<p>An ipython notebook to reproduce results in the paper can be found in this&nbsp;<a href="https://github.com/govinda-kamath/HINGE-analyses">repository</a>.</p>
</li>
</ul>
<p>HINGE is an OLC(Overlap-Layout-Consensus) assembler. The idea of the pipeline is shown below.</p>
<p><a href="https://github.com/HingeAssembler/HINGE/blob/master/misc/High_level_overview.png" target="_blank"><img src="https://github.com/HingeAssembler/HINGE/raw/master/misc/High_level_overview.png" alt="image" style="border: 0px;"></a></p><p>Address of the bookmark: <a href="https://github.com/HingeAssembler/HINGE" rel="nofollow">https://github.com/HingeAssembler/HINGE</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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