<![CDATA[BOL: TAREAN: A computational tool for identification and characterization of satellite DNA from unassembled short reads]]> https://bioinformaticsonline.com/bookmarks/view/36607/tarean-a-computational-tool-for-identification-and-characterization-of-satellite-dna-from-unassembled-short-reads? https://bioinformaticsonline.com/bookmarks/view/36607/tarean-a-computational-tool-for-identification-and-characterization-of-satellite-dna-from-unassembled-short-reads Tue, 15 May 2018 02:53:11 -0500 https://bioinformaticsonline.com/bookmarks/view/36607/tarean-a-computational-tool-for-identification-and-characterization-of-satellite-dna-from-unassembled-short-reads <![CDATA[TAREAN: A computational tool for identification and characterization of satellite DNA from unassembled short reads]]> TAndem REpeat ANalyzer -TAREAN – is a computational pipeline for unsupervised identification of satellite repeats from unassembled sequence reads. The pipeline uses low-pass whole genome sequence reads and performs their graph-based clustering. Resulting clusters, representing all types of repeats, are then examined for the presence of circular structures and putative satellite repeats are reported.

How to use TAREAN:

Development of TAREAN was supported by ELIXIR CZ research infrastructure project (MEYS Grant No: LM2015047).

References

Novak, P., Avila Robledillo, L., Koblizkova, A., Vrbova, I., Neumann, P., Macas, J. (2017) – TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads. Nucleic Acids Res., doi:10.1093/nar/gkx257

Address of the bookmark: https://bitbucket.org/petrnovak/repex_tarean

]]> Surabhi Chaudhary