<![CDATA[BOL: bpRNA: large-scale automated annotation and analysis of RNA secondary structure]]> https://bioinformaticsonline.com/bookmarks/view/36730/bprna-large-scale-automated-annotation-and-analysis-of-rna-secondary-structure? https://bioinformaticsonline.com/bookmarks/view/36730/bprna-large-scale-automated-annotation-and-analysis-of-rna-secondary-structure Wed, 23 May 2018 03:24:33 -0500 https://bioinformaticsonline.com/bookmarks/view/36730/bprna-large-scale-automated-annotation-and-analysis-of-rna-secondary-structure <![CDATA[bpRNA: large-scale automated annotation and analysis of RNA secondary structure]]> bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, precise, compact, unambiguous, easily-interpretable description of all loops, stems, and pseudoknots, along with the positions, sequence, and flanking base pairs of each such structural feature.

The bpRNA code is written in perl and requires the Graph perl module. Several additional scripts for analysis are included. The source code is available at http://github.com/hendrixlab/bpRNA.

Address of the bookmark: http://github.com/hendrixlab/bpRNA

]]> Rahul Nayak