<![CDATA[BOL: Indexcov: fast coverage quality control for whole-genome sequencing]]> https://bioinformaticsonline.com/bookmarks/view/37602/indexcov-fast-coverage-quality-control-for-whole-genome-sequencing? https://bioinformaticsonline.com/bookmarks/view/37602/indexcov-fast-coverage-quality-control-for-whole-genome-sequencing Wed, 29 Aug 2018 09:20:46 -0500 https://bioinformaticsonline.com/bookmarks/view/37602/indexcov-fast-coverage-quality-control-for-whole-genome-sequencing <![CDATA[Indexcov: fast coverage quality control for whole-genome sequencing]]> indexcov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize potential batch effects, and infer the sex of a sample. Indexcov is available at https://github.com/brentp/goleft under the MIT license.

Address of the bookmark: https://github.com/brentp/goleft

]]> Jit https://bioinformaticsonline.com/bookmarks/view/37602/indexcov-fast-coverage-quality-control-for-whole-genome-sequencing#item-annotation-3478 Wed, 29 Aug 2018 09:27:01 -0500 https://bioinformaticsonline.com/bookmarks/view/37602/indexcov-fast-coverage-quality-control-for-whole-genome-sequencing#item-annotation-3478 <![CDATA[Comment by Jit]]> Installing goleft

➜ falconUnzip_assembly bioconda install goleft
zsh: command not found: bioconda
➜ falconUnzip_assembly conda install goleft
Solving environment: done

## Package Plan ##

environment location: /home/urbe/anaconda3

added / updated specs:
- goleft


The following packages will be downloaded:

package | build
---------------------------|-----------------
ca-certificates-2018.8.24 | ha4d7672_0 136 KB conda-forge
certifi-2018.8.24 | py36_1 139 KB conda-forge
goleft-0.1.18 | 1 6.6 MB bioconda
openssl-1.0.2p | h470a237_0 3.5 MB conda-forge
------------------------------------------------------------
Total: 10.4 MB

The following NEW packages will be INSTALLED:

goleft: 0.1.18-1 bioconda

The following packages will be UPDATED:

ca-certificates: 2018.8.13-ha4d7672_0 conda-forge --> 2018.8.24-ha4d7672_0 conda-forge
certifi: 2018.8.13-py36_0 conda-forge --> 2018.8.24-py36_1 conda-forge
openssl: 1.0.2o-h470a237_1 conda-forge --> 1.0.2p-h470a237_0 conda-forge

Proceed ([y]/n)? Y


Downloading and Extracting Packages
ca-certificates-2018 | 136 KB | ####################################################################################################################### | 100%
certifi-2018.8.24 | 139 KB | ####################################################################################################################### | 100%
goleft-0.1.18 | 6.6 MB | ####################################################################################################################### | 100%
openssl-1.0.2p | 3.5 MB | ####################################################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done

]]> Jit