<![CDATA[BOL: Qualimap2: Evaluating next generation sequencing alignment data]]> https://bioinformaticsonline.com/bookmarks/view/37674/qualimap2-evaluating-next-generation-sequencing-alignment-data? https://bioinformaticsonline.com/bookmarks/view/37674/qualimap2-evaluating-next-generation-sequencing-alignment-data Tue, 11 Sep 2018 04:44:29 -0500 https://bioinformaticsonline.com/bookmarks/view/37674/qualimap2-evaluating-next-generation-sequencing-alignment-data <![CDATA[Qualimap2: Evaluating next generation sequencing alignment data]]> Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. 

Supported types of experiments include:

  • Whole-genome sequencing
  • Whole-exome sequencing
  • RNA-seq (speical mode available)
  • ChIP-seq

Address of the bookmark: http://qualimap.bioinfo.cipf.es/

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