<![CDATA[BOL: RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models]]> https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models? https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models Wed, 24 Oct 2018 22:38:05 -0500 https://bioinformaticsonline.com/bookmarks/view/37982/raven-a-software-suite-for-matlab-that-allows-for-semi-automated-reconstruction-of-genome-scale-models <![CDATA[RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models]]> The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled with extensive gap-filling and quality control features. The software suite also contains methods for visualizing simulation results and omics data, as well as a range of methods for performing simulations and analyzing the results. The software is a useful tool for system-wide data analysis in a metabolic context and for streamlined reconstruction of metabolic networks based on protein homology.

Address of the bookmark: https://github.com/SysBioChalmers/RAVEN

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