<![CDATA[BOL: UPhO: Scripts for homology and orthology assessment from genomic sequences.]]> https://bioinformaticsonline.com/bookmarks/view/38678/upho-scripts-for-homology-and-orthology-assessment-from-genomic-sequences? https://bioinformaticsonline.com/bookmarks/view/38678/upho-scripts-for-homology-and-orthology-assessment-from-genomic-sequences Mon, 14 Jan 2019 10:36:42 -0600 https://bioinformaticsonline.com/bookmarks/view/38678/upho-scripts-for-homology-and-orthology-assessment-from-genomic-sequences <![CDATA[UPhO: Scripts for homology and orthology assessment from genomic sequences.]]> UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies. Type UPhO.py -h for help.

The only input requierement for UPhO is a tree (or trees) in Newick format in which the leaves are named with a species idenfifier, a field separator, and sequence identifier. By default, the field separator is the character "|" but custom delimiters can be defined. Examples of trees to test UPhO are provided in the TestData folder.

Address of the bookmark: https://github.com/ballesterus/UPhO

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