<![CDATA[BOL: snakepipes: A toolkit based on snakemake and python for analysis of NGS data]]> https://bioinformaticsonline.com/bookmarks/view/39441/snakepipes-a-toolkit-based-on-snakemake-and-python-for-analysis-of-ngs-data? https://bioinformaticsonline.com/bookmarks/view/39441/snakepipes-a-toolkit-based-on-snakemake-and-python-for-analysis-of-ngs-data Thu, 30 May 2019 04:06:13 -0500 https://bioinformaticsonline.com/bookmarks/view/39441/snakepipes-a-toolkit-based-on-snakemake-and-python-for-analysis-of-ngs-data <![CDATA[snakepipes: A toolkit based on snakemake and python for analysis of NGS data]]> snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data.

  • DNA-mapping*
  • ChIP-seq*
  • RNA-seq*
  • ATAC-seq*
  • scRNA-seq
  • Hi-C
  • Whole Genome Bisulfite Seq/WGBS

(*Also available in "allele-specific" mode)

snakePipes can be installed via conda :

'conda install -c mpi-ie -c bioconda -c conda-forge snakePipes'.

Source code (https://github.com/maxplanck-ie/snakepipes) and documentation (https://snakepipes.readthedocs.io/en/latest/) are available online.

Address of the bookmark: https://github.com/maxplanck-ie/snakepipes

]]> Jit