<![CDATA[BOL: Retrieving Taxonomic Information with R]]> https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r? https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r Thu, 29 Aug 2019 01:38:39 -0500 https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r <![CDATA[Retrieving Taxonomic Information with R]]> This vignette will introduce users to the retrieval of taxonomic information with myTAI. The taxonomy() function implemented in myTAI relies on the powerful package taxize. Nevertheless, taxonomic information retrieval has been customized for the myTAI standard and for organism specific information retrieval.

Specifically, the taxonomy() function implemented in myTAI can be used to classify genomes according to phylogenetic classification into Phylostrata (Phylostratigraphy) or to retrieve species specific taxonomic information when performing Divergence Stratigraphy (see Introduction for details).

Address of the bookmark: https://cran.r-project.org/web/packages/myTAI/vignettes/Taxonomy.html

]]> Rahul Nayak https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r#item-annotation-3651 Thu, 29 Aug 2019 20:25:16 -0500 https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r#item-annotation-3651 <![CDATA[Comment by Jit]]> This could work as well 

https://metacpan.org/pod/Bio::DB::Taxonomy

]]> Jit https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r#item-annotation-3650 Thu, 29 Aug 2019 20:22:55 -0500 https://bioinformaticsonline.com/bookmarks/view/39884/retrieving-taxonomic-information-with-r#item-annotation-3650 <![CDATA[Comment by Jit]]> Perl solution to the problem 

https://metacpan.org/pod/Bio::Taxon

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