<![CDATA[BOL: RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler]]> https://bioinformaticsonline.com/bookmarks/view/40510/reps-repeat-masked-phrap-with-scaffolding-a-wgs-sequence-assembler? https://bioinformaticsonline.com/bookmarks/view/40510/reps-repeat-masked-phrap-with-scaffolding-a-wgs-sequence-assembler Sat, 04 Jan 2020 01:08:09 -0600 https://bioinformaticsonline.com/bookmarks/view/40510/reps-repeat-masked-phrap-with-scaffolding-a-wgs-sequence-assembler <![CDATA[RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler]]> RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairing information is used to construct scaffolds that order and orient the contigs. The updated version of RePS incorporates some of the ideas introduced by Phusion on clustering

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More at

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC186573/

Address of the bookmark: ftp://ftp.genomics.org.cn/pub/ricedb/Tools/RePS/RePS-IBM-AIX.tar.gz

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