<![CDATA[BOL: Bioinformatics Algorithm Demonstrations and Tutorials]]> https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials?annoff=50 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials Thu, 29 Aug 2013 09:23:51 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials <![CDATA[Bioinformatics Algorithm Demonstrations and Tutorials]]> Abstract

This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsheets provide an interesting platform for demonstration of algorithms, since various steps of the calculations can be exposed in a manner that is easily comprehensible to users with little programming experience. The algorithms demonstrated include two approaches to approximate string matching (dynamic programming and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogenetic studies and microarray analysis of gene expression), a Naive Bayes Classifier for simulated microarray gene expression data, and a simple Neural Network. These demonstrations are designed to serve as instructional aids in bioinformatics courses.

Tutorial @ http://www.cybertory.org/downloads/bae/BioinformaticsAlgorithmsInExcel.zip

One of the best resource for online bioinformatics learning is https://stepic.org/Bioinformatics-Algorithms-2 Enjoy the online learning.

Reference : cybertory

" Please add your favourite bioinformatics algorithms and tutorial links below in the comment section, for the benefit of bioinformatics and computational biology community ". 

Address of the bookmark: http://www.cybertory.org/downloads/bae/BioinformaticsAlgorithmsExcelDoc.pdf

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-606 Sat, 31 Aug 2013 03:54:33 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-606 <![CDATA[Comment by Archana Malhotra]]> Heuristic Algorithms in Bioinformatics http://users-birc.au.dk/cstorm/students/Vesterstroem_Mar2006.pdf

]]> Archana Malhotra https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-605 Fri, 30 Aug 2013 13:52:12 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-605 <![CDATA[Comment by Jitendra Narayan]]> Support Vector Machines in Bioinformatics: a Survey

http://home.deib.polimi.it/chicco/SVM_in_Bioinformatics-TR_-_DavideChicco_2012-10-12.pdf

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-601 Fri, 30 Aug 2013 06:53:51 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-601 <![CDATA[Comment by Archana Malhotra]]> Bioinformatics and Sequence Alignment http://www.ks.uiuc.edu/Training/Tutorials/science/bioinformatics-tutorial/bioinformatics.pdf

]]> Archana Malhotra https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-600 Fri, 30 Aug 2013 06:03:39 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-600 <![CDATA[Comment by Jitendra Narayan]]> Applications of genetic algorithms in bioinformatics by Amie @ http://scholarworks.sjsu.edu/cgi/viewcontent.cgi?article=4491&context=etd_theses

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-598 Thu, 29 Aug 2013 17:58:21 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-598 <![CDATA[Comment by Agampreet Kaur]]> Global sequence alignment using Needleman/Wunsch techniques ... Dynamic Programming http://www.avatar.se/molbioinfo2001/dynprog/dynamic.html

]]> Agampreet Kaur https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-595 Thu, 29 Aug 2013 15:54:31 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-595 <![CDATA[Comment by Jitendra Narayan]]> There are lots of books on bioinformatics algorithms, but I personally found this online book "Introduction to algorithms in bioinformatics" very easy to follow and understand. 

Note1: http://www.renyi.hu/~miklosi/AlgorithmsOfBioinformatics.pdf

Note2: http://www.vaughaneveleigh.co.uk/wp-content/uploads/2012/02/Bioinformatics-Algorithms.pdf

]]> Jitendra Narayan https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-592 Thu, 29 Aug 2013 15:34:35 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-592 <![CDATA[Comment by Archana Malhotra]]> Introduction to Bioinformatics Algorithms by Jones and Pevzner  http://read.pudn.com/downloads160/ebook/722845/Intro%20to%20Bioinformatics%20Algorithms.pdf

]]> Archana Malhotra https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-591 Thu, 29 Aug 2013 15:30:34 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-591 <![CDATA[Comment by Archana Malhotra]]> Introduction to Bioinformatics Algorithms tutorial provide a good overview of algorithms http://www.cse.sc.edu/~maxal/csce590b/Lect01-02.pdf

]]> Archana Malhotra https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-590 Thu, 29 Aug 2013 14:55:57 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-590 <![CDATA[Comment by Jitendra Prajapati]]> Bioinformatics Algorithms; Techniques and Application book provide an in-depth survey of the most important developments in bioinformatics algorithms in the postgenomic era.

More @ http://urania.udea.edu.co/sitios/astronomia-2.0/pages/descargas.rs/files/descargasdt5vi/Cursos/CursosEspeciales/HerramientasComputacionales/2011-2/Referencias/Mandoi_et_al2008-BioinformaticsAlgorithms.pdf

http://webdocs.cs.ualberta.ca/~ys3/Publications/scl08.pdf

]]> Jitendra Prajapati https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-588 Thu, 29 Aug 2013 14:40:49 -0500 https://bioinformaticsonline.com/bookmarks/view/4098/bioinformatics-algorithm-demonstrations-and-tutorials#item-annotation-588 <![CDATA[Comment by Jitendra Prajapati]]> A graph-theory algorithm for rapid protein side-chain prediction.

More @ http://www.ncbi.nlm.nih.gov/pubmed/12930999

]]> Jitendra Prajapati