<![CDATA[BOL: Sequanix: a dynamic graphical interface for Snakemake workflows]]> https://bioinformaticsonline.com/bookmarks/view/40996/sequanix-a-dynamic-graphical-interface-for-snakemake-workflows? https://bioinformaticsonline.com/bookmarks/view/40996/sequanix-a-dynamic-graphical-interface-for-snakemake-workflows Wed, 12 Feb 2020 01:20:34 -0600 https://bioinformaticsonline.com/bookmarks/view/40996/sequanix-a-dynamic-graphical-interface-for-snakemake-workflows <![CDATA[Sequanix: a dynamic graphical interface for Snakemake workflows]]>
  • A Python library dedicated to NGS analysis (e.g., tools to visualise standard NGS formats).
  • A set of pipelines dedicated to NGS in the form of Snakefiles (Makefile-like with Python syntax based on snakemake framework) with more than 80 re-usable rules (see Rules).
  • Original tools to help in the creation of such pipelines including HTML reports.
  • Standalone applications:
    1. sequana_coverage ease the extraction of genomic regions of interest and genome coverage information
    2. sequana_taxonomy performs a quick taxonomy of your FastQ. This requires dedicated databases to be downloaded.
    3. Sequanix: GUI for snakemake workflows, a GUI for Snakemake workflows (hence Sequana pipelines as well)

    More at https://sequana.readthedocs.io/en/master/

    • Address of the bookmark: https://github.com/sequana/sequana

    ]]>     BioStar