<![CDATA[BOL: RAINBOWR: Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)]]> https://bioinformaticsonline.com/bookmarks/view/41272/rainbowr-reliable-association-inference-by-optimizing-weights-with-r-r-package-for-snp-set-gwas-and-multi-kernel-mixed-model? https://bioinformaticsonline.com/bookmarks/view/41272/rainbowr-reliable-association-inference-by-optimizing-weights-with-r-r-package-for-snp-set-gwas-and-multi-kernel-mixed-model Fri, 28 Feb 2020 23:27:37 -0600 https://bioinformaticsonline.com/bookmarks/view/41272/rainbowr-reliable-association-inference-by-optimizing-weights-with-r-r-package-for-snp-set-gwas-and-multi-kernel-mixed-model <![CDATA[RAINBOWR: Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)]]> RAINBOWR(Reliable Association INference By Optimizing Weights with R) is a package to perform several types of GWAS as follows.

  • Single-SNP GWAS with RGWAS.normal function
  • SNP-set (or gene set) GWAS with RGWAS.multisnp function (which tests multiple SNPs at the same time)
  • Check epistatic (SNP-set x SNP-set interaction) effects with RGWAS.epistasis (very slow and less reliable)

https://github.com/KosukeHamazaki/RAINBOWR

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007663

https://cran.r-project.org/web/packages/RAINBOWR/index.html

Address of the bookmark: https://github.com/KosukeHamazaki/RAINBOWR

]]> Surabhi Chaudhary