<![CDATA[BOL: GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure]]> https://bioinformaticsonline.com/bookmarks/view/41362/genemates-an-r-package-for-detecting-horizontal-gene-co-transfer-between-bacteria-using-gene-gene-associations-controlled-for-population-structure? https://bioinformaticsonline.com/bookmarks/view/41362/genemates-an-r-package-for-detecting-horizontal-gene-co-transfer-between-bacteria-using-gene-gene-associations-controlled-for-population-structure Sat, 07 Mar 2020 05:52:20 -0600 https://bioinformaticsonline.com/bookmarks/view/41362/genemates-an-r-package-for-detecting-horizontal-gene-co-transfer-between-bacteria-using-gene-gene-associations-controlled-for-population-structure <![CDATA[GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure]]> GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where presence-absence status of acquired genes is usually confounded by bacterial population structure due to clonal reproduction.

https://www.biorxiv.org/content/10.1101/2020.02.29.970970v1

Address of the bookmark: https://github.com/wanyuac/GeneMates

]]> Rahul Nayak