<![CDATA[BOL: chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps]]> https://bioinformaticsonline.com/bookmarks/view/41485/chromosight-computer-vision-based-program-for-pattern-recognition-in-chromosome-hi-c-contact-maps? https://bioinformaticsonline.com/bookmarks/view/41485/chromosight-computer-vision-based-program-for-pattern-recognition-in-chromosome-hi-c-contact-maps Mon, 23 Mar 2020 06:20:04 -0500 https://bioinformaticsonline.com/bookmarks/view/41485/chromosight-computer-vision-based-program-for-pattern-recognition-in-chromosome-hi-c-contact-maps <![CDATA[chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps]]> Python package to detect chromatin loops (and other patterns) in Hi-C contact maps.

Stable version with pip:

pip3 install --user chromosight

Stable version with conda:

conda install -c bioconda -c conda-forge chromosight

or, if you want to get the latest development version:

pip3 install --user -e git+https://github.com/koszullab/chromosight.git@master#egg=chromosight

Address of the bookmark: https://github.com/koszullab/Chromosight

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