BOL: Coronavirus Resources !

Coronavirus Resources !

Neel — Wed, 25 Mar 2020 17:11:33 -0500

2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC. It also incorporates a wide range of relevant information including scientific literatures, news, and popular articles for science dissemination, and provides visualization functionalities for genome variation analysis results based on all collected 2019-nCoV strains.

Annotation

https://bigd.big.ac.cn/ncov/variation/annotation

Genome wharehouse

https://bigd.big.ac.cn/gwh/browse/index

Released Genome

https://bigd.big.ac.cn/ncov/release_genome

Download data

ftp://download.big.ac.cn/Genome/Viruses/Coronaviridae/

Raw data

https://bigd.big.ac.cn/gsa/browse/run/?tag=Coronaviridae

Address of the bookmark: https://bigd.big.ac.cn/ncov/about

Comment by LEGE

LEGE — Fri, 17 Sep 2021 11:22:13 -0500

The US government SARS-CoV-2 Interagency Group (SIG) developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants:

Intersting piece of information

https://www.cdc.gov/coronavirus/2019-ncov/variants/variant-info.html

Comment by LEGE

LEGE — Fri, 17 Sep 2021 01:49:02 -0500

Illumina toolkit for SARS-CoV2

https://sapac.illumina.com/informatics/biological-interpretation/coronavirus-software.html#about

Comment by Surabhi Chaudhary

Surabhi Chaudhary — Sun, 27 Jun 2021 03:00:35 -0500

Some important resources here https://artic.network/ncov-2019

Comment by Jit

Jit — Thu, 11 Jun 2020 20:58:11 -0500

Gene and protein expression data of human genes implicated in the virus infection of the host cells. Identifying cell types and genes with highest expression in SARS-CoV-2 infections.

https://www.covid19dataportal.org/expression?db=expression

Comment by Jit

Jit — Thu, 11 Jun 2020 20:54:46 -0500

Range of SARS-CoV-2 and SARS-CoV data for drug target identification and prioritisation. https://www.covid19dataportal.org/targets?db=complex-portal

Comment by Jit

Jit — Thu, 11 Jun 2020 20:54:15 -0500

Curated range of SARS-CoV-2 compound activity data.https://www.covid19dataportal.org/compounds?db=chembl-document

Comment by Jit

Jit — Thu, 11 Jun 2020 20:53:44 -0500

Curated functional and classification data on the SARS-CoV-2 protein entries and associated protein receptors. https://www.covid19dataportal.org/proteins?db=uniprot-covid19

Comment by Jit

Jit — Thu, 11 Jun 2020 20:53:07 -0500

SARS-CoV-2 protein structures, highlighting important structural features to support the development of treatments and vaccines.

https://www.covid19dataportal.org/structures?db=structures

Comment by Jit

Jit — Thu, 11 Jun 2020 20:51:50 -0500

Raw and assembled sequences related to the COVID-19 outbreak, including outbreak isolates and records relating to coronavirus biology. Includes extensive sampling information. https://www.covid19dataportal.org/sequences?db=embl

Comment by Jit

Jit — Thu, 11 Jun 2020 20:51:20 -0500

Corona virus data resources https://www.covid19dataportal.org/

Comment by biogeek

biogeek — Thu, 07 May 2020 10:05:29 -0500

Genome detective https://www.genomedetective.com/app/typingtool/virus/

Comment by Jit

Jit — Thu, 07 May 2020 08:18:55 -0500

SARS-CoV-2 SNP Calling pipeline https://github.com/DamienFr/CoV-homoplasy

Comment by Jit

Jit — Thu, 07 May 2020 08:17:58 -0500

UK Covid consortium https://www.cogconsortium.uk/data/

Comment by Jit

Jit — Thu, 07 May 2020 08:17:19 -0500

CoViD Selection analysis http://virological.org/t/selection-analysis-of-gisaid-sars-cov-2-data/448

Comment by Jit

Jit — Thu, 07 May 2020 08:07:49 -0500

UK resource in CoViD19 http://cov-glue.cvr.gla.ac.uk/#/home

https://macman123.shinyapps.io/ugi-scov2-alignment-screen/