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	<title><![CDATA[BOL: Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.]]></title>
	<link>https://bioinformaticsonline.com/bookmarks/view/41734/supernova-generates-phased-whole-genome-de-novo-assemblies-from-a-chromium-prepared-library?</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41734/supernova-generates-phased-whole-genome-de-novo-assemblies-from-a-chromium-prepared-library</guid>
	<pubDate>Sun, 31 May 2020 01:59:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41734/supernova-generates-phased-whole-genome-de-novo-assemblies-from-a-chromium-prepared-library</link>
	<title><![CDATA[Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.]]></title>
	<description><![CDATA[<p>Supernova generates phased, whole-genome&nbsp;<em>de novo</em>&nbsp;assemblies from a Chromium-prepared library.</p>
<p>Please see&nbsp;<a href="https://support.10xgenomics.com/de-novo-assembly/guidance/doc/achieving-success-with-de-novo-assembly">Achieving Success with De Novo Assembly</a>&nbsp;and&nbsp;<a href="https://support.10xgenomics.com/de-novo-assembly/software/overview/system-requirements">System Requirements</a>&nbsp;<em>before</em>&nbsp;creating your Chromium libraries for assembly.</p>
<p>Supernova should be run using 38-56x coverage of the genome.<br>&bull; Somewhat higher coverage is&nbsp;<em>sometimes</em>&nbsp;advantageous.<br>&bull; Supernova will exit if it finds that coverage is far from the recommended range.<br>&bull; Note that at most 2.14 billion reads are allowed.<br>&bull; Please note that we have not extensively tested genomes larger than human, and any genome above approximately 4 GB should be considered experimental and is not supported.</p><p>Address of the bookmark: <a href="https://support.10xgenomics.com/de-novo-assembly/software/pipelines/latest/using/running" rel="nofollow">https://support.10xgenomics.com/de-novo-assembly/software/pipelines/latest/using/running</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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