<![CDATA[BOL: sunbeam: A robust, extensible metagenomics pipeline]]> https://bioinformaticsonline.com/bookmarks/view/41893/sunbeam-a-robust-extensible-metagenomics-pipeline? https://bioinformaticsonline.com/bookmarks/view/41893/sunbeam-a-robust-extensible-metagenomics-pipeline Thu, 18 Jun 2020 06:58:52 -0500 https://bioinformaticsonline.com/bookmarks/view/41893/sunbeam-a-robust-extensible-metagenomics-pipeline <![CDATA[sunbeam: A robust, extensible metagenomics pipeline]]> Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies, so it doesn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workstations and clusters. To read more, check out our paper in Microbiome.

https://sunbeam.readthedocs.io/en/latest/

Address of the bookmark: https://github.com/sunbeam-labs/sunbeam

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