<![CDATA[BOL: RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler]]> https://bioinformaticsonline.com/bookmarks/view/41959/rna-bloom-a-fast-and-memory-efficient-de-novo-transcript-sequence-assembler? https://bioinformaticsonline.com/bookmarks/view/41959/rna-bloom-a-fast-and-memory-efficient-de-novo-transcript-sequence-assembler Thu, 09 Jul 2020 03:13:06 -0500 https://bioinformaticsonline.com/bookmarks/view/41959/rna-bloom-a-fast-and-memory-efficient-de-novo-transcript-sequence-assembler <![CDATA[RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler]]> RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types:

  • single-end/paired-end bulk RNA-seq (strand-specific/agnostic)
  • paired-end single-cell RNA-seq (strand-specific/agnostic)
  • nanopore RNA-seq (PCR cDNA/direct cDNA/direct RNA)

Written by Ka Ming Nip ✉️

Address of the bookmark: https://github.com/bcgsc/RNA-Bloom

]]> LEGE