<![CDATA[BOL: CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R]]> https://bioinformaticsonline.com/bookmarks/view/42313/crbhits-from-conditional-reciprocal-best-hits-to-codon-alignments-and-kaks-in-r? https://bioinformaticsonline.com/bookmarks/view/42313/crbhits-from-conditional-reciprocal-best-hits-to-codon-alignments-and-kaks-in-r Wed, 11 Nov 2020 23:06:03 -0600 https://bioinformaticsonline.com/bookmarks/view/42313/crbhits-from-conditional-reciprocal-best-hits-to-codon-alignments-and-kaks-in-r <![CDATA[CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R]]> CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculations and synteny. The new R package targets ecology, population and evolutionary biologists working in the field of comparative genomics.

Address of the bookmark: https://gitlab.gwdg.de/mpievolbio-it/crbhits

]]> Shruti Paniwala