<![CDATA[BOL: 3D Genome Browser: explore chromatin interaction data, such as Hi-C, ChIA-PET, Capture Hi-C, PLAC-Seq, and more]]> https://bioinformaticsonline.com/bookmarks/view/42661/3d-genome-browser-explore-chromatin-interaction-data-such-as-hi-c-chia-pet-capture-hi-c-plac-seq-and-more? https://bioinformaticsonline.com/bookmarks/view/42661/3d-genome-browser-explore-chromatin-interaction-data-such-as-hi-c-chia-pet-capture-hi-c-plac-seq-and-more Fri, 22 Jan 2021 20:19:32 -0600 https://bioinformaticsonline.com/bookmarks/view/42661/3d-genome-browser-explore-chromatin-interaction-data-such-as-hi-c-chia-pet-capture-hi-c-plac-seq-and-more <![CDATA[3D Genome Browser: explore chromatin interaction data, such as Hi-C, ChIA-PET, Capture Hi-C, PLAC-Seq, and more]]> Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a complete view of both regulatory landscape and 3D genome structure for any given gene. You can also check the expression of any queried gene across hundreds of tissue/cell types measured by the ENCODE consortium. Finally, please check out the virtual 4C page, where we provide multiple methods to link distal cis-regulatory elements with their potential target genes, including virtual 4C, ChIA-PET and cross-cell-type correlation of proximal and distal DHSs.

Address of the bookmark: http://3dgenome.fsm.northwestern.edu/index.html

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