<![CDATA[BOL: CoverM: Read coverage calculator for metagenomics]]> https://bioinformaticsonline.com/bookmarks/view/43048/coverm-read-coverage-calculator-for-metagenomics? https://bioinformaticsonline.com/bookmarks/view/43048/coverm-read-coverage-calculator-for-metagenomics Thu, 29 Apr 2021 23:39:14 -0500 https://bioinformaticsonline.com/bookmarks/view/43048/coverm-read-coverage-calculator-for-metagenomics <![CDATA[CoverM: Read coverage calculator for metagenomics]]> CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications.

CoverM calculates coverage of genomes/MAGs coverm genome (help) or individual contigs coverm contig (help). Calculating coverage by read mapping, its input can either be BAM files sorted by reference, or raw reads and reference genomes in various formats.

Address of the bookmark: https://github.com/wwood/CoverM

]]> Neel