<![CDATA[BOL: VCF Compare !]]> https://bioinformaticsonline.com/bookmarks/view/43711/vcf-compare? https://bioinformaticsonline.com/bookmarks/view/43711/vcf-compare Wed, 19 Jan 2022 10:30:14 -0600 https://bioinformaticsonline.com/bookmarks/view/43711/vcf-compare <![CDATA[VCF Compare !]]> compare two BWA mapping methods with the online hg18-mapped data

We first operate a rapid inspection of the different BAM files using samtools flagstat. Illumina provided chr21 read mapping obtained with their GA IIx deep sequencing platform <ftp://webdata:webdata@ussd-ftp.illumina.com/Data/SequencingRuns/NA18507_GAIIx_100_chr21.bam>, aligned to the b36/hg18 reference genome)

Address of the bookmark: https://wiki.bits.vib.be/index.php/NGS_Exercise.6#compare_aln_.26_mem_results_with_vcf-compare

]]> Rahul Nayak