<![CDATA[BOL: Panacus : A Counting Tool for Pangenome Graphs]]> https://bioinformaticsonline.com/bookmarks/view/44571/panacus-a-counting-tool-for-pangenome-graphs? https://bioinformaticsonline.com/bookmarks/view/44571/panacus-a-counting-tool-for-pangenome-graphs Fri, 14 Jun 2024 14:42:28 -0500 https://bioinformaticsonline.com/bookmarks/view/44571/panacus-a-counting-tool-for-pangenome-graphs <![CDATA[Panacus : A Counting Tool for Pangenome Graphs]]> panacus is a tool for calculating statistics for GFA files. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., nodes do not overlap and consequently, each link (L) points from the end of one segment (S) to the start of another.

panacus supports the following calculations:

  • coverage histogram
  • pangenome growth statistics
  • path-/group-resolved coverage table

Address of the bookmark: https://github.com/marschall-lab/panacus

]]> Neel