<![CDATA[BOL: Lorikeet: Strain resolver for metagenomics]]> https://bioinformaticsonline.com/bookmarks/view/44587/lorikeet-strain-resolver-for-metagenomics? https://bioinformaticsonline.com/bookmarks/view/44587/lorikeet-strain-resolver-for-metagenomics Sat, 06 Jul 2024 04:21:31 -0500 https://bioinformaticsonline.com/bookmarks/view/44587/lorikeet-strain-resolver-for-metagenomics <![CDATA[Lorikeet: Strain resolver for metagenomics]]> Lorikeet is a within-species variant analysis pipeline for metagenomic communities that utilizes both long and short reads. Lorikeet utilizes a re-implementaion of the GATK HaplotypeCaller algorithm, performing local re-assembly of potentially active regions within candidate genomes. Called variants can be clustered into likely strains using a combination of UMAP and HDBSCAN.

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Address of the bookmark: https://github.com/rhysnewell/Lorikeet

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