<![CDATA[BOL: WinPCA]]> https://bioinformaticsonline.com/bookmarks/view/44906/winpca? https://bioinformaticsonline.com/bookmarks/view/44906/winpca Tue, 23 Sep 2025 03:58:13 -0500 https://bioinformaticsonline.com/bookmarks/view/44906/winpca <![CDATA[WinPCA]]> A package for windowed principal component analysis. WinPCA performs principal component analyses (PCA) in sliding windows along chromosomes. Both hard-called genotypes (input: VCF or TSV) or genotype likelihoods (input: VCF, TSV or BEAGLE) encoding biallellic SNPs are accepted. WinPCA uses scikit-allel to perfom PCAs on genotype data and PCAngsd methods for genotype likelihood (GL, PL) data.

Address of the bookmark: https://github.com/MoritzBlumer/winpca

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