<![CDATA[BOL: Collection of molecular modelling and drug design related tutorial ...]]> https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial? https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial Thu, 26 Sep 2013 16:36:19 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial <![CDATA[Collection of molecular modelling and drug design related tutorial ...]]> The Rosetta macromolecular modeling, prediction, and design software suite is supported by a large developer community and enjoys a diverse user base. Each year Rosetta developers and users from academia and industry meet to discuss improvements and new code, as well as exciting, emerging applications.

This Collection draws from material presented at RosettaCon 2012. The Collection is meant to both highlight new scientific developments within the Rosetta community and provide a rigorously reproducible workflow for each protocol. This year's Collection highlights exciting advances that increase the usability of Rosetta, improve current methods, and introduce completely new protocols.

More @ http://www.ploscollections.org/article/browse/issue/info:doi/10.1371/issue.pcol.v02.i21

Please add your useful web-link or pdf-link below in comment section...

Address of the bookmark: http://www.ploscollections.org/article/browse/issue/info:doi/10.1371/issue.pcol.v02.i21

]]> Shikha Logwani https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-1270 Sat, 15 Mar 2014 16:59:02 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-1270 <![CDATA[Comment by Aadhira Naagrani]]> A useful blog at http://molecularmodelingbasics.blogspot.in/

]]> Aadhira Naagrani https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-1269 Sat, 15 Mar 2014 16:58:14 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-1269 <![CDATA[Comment by Aadhira Naagrani]]> This Molecular Structure Modeling Tutorial is usefule for beginners http://www.chem.ucla.edu/harding/tutorials/models/models02.pdf

]]> Aadhira Naagrani https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-1179 Fri, 28 Feb 2014 04:16:27 -0600 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-1179 <![CDATA[Comment by Shikha Logwani]]> AutoDock VINA is an open-source program for doing molecular docking http://vina.scripps.edu/index.html

]]> Shikha Logwani https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-970 Wed, 20 Nov 2013 10:44:27 -0600 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-970 <![CDATA[Comment by Manisha Mishra]]> Pharmaceutical bioinformatics is a new discipline in the area of the genomics revolution. It is central to biomedicine with application in areas like pharmacy, medicine, biology and medicinal chemistry.

http://www.pharmbio.org/

]]> Manisha Mishra https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-962 Tue, 19 Nov 2013 07:27:40 -0600 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-962 <![CDATA[Comment by Kamalakshi Mukherjee]]> Molecular Conformation Dynamics andComputational Drug Design http://opus4.kobv.de/opus4-zib/files/742/ZR-03-20.pdf

]]> Kamalakshi Mukherjee https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-961 Tue, 19 Nov 2013 07:26:20 -0600 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-961 <![CDATA[Comment by Kamalakshi Mukherjee]]> Computer-aided drug design platform using PyMOL User Guide http://people.pharmacy.purdue.edu/~mlill/software/pymol_plugins/Manual_010612.pdf

]]> Kamalakshi Mukherjee https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-960 Tue, 19 Nov 2013 07:24:30 -0600 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-960 <![CDATA[Comment by Kamalakshi Mukherjee]]> Using AutoDock 4 with  AutoDockTools: A Tutorial  Written by Ruth Huey and Garrett M. Morris http://dasher.wustl.edu/chem478/software/autodock-tutorial.pdf

]]> Kamalakshi Mukherjee https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-959 Tue, 19 Nov 2013 07:12:10 -0600 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-959 <![CDATA[Comment by Kamalakshi Mukherjee]]> ISOA/ARF Drug Development Tutorial  By Jens Eckstein http://www.alzforum.org/drg/tut/ISOATutorial.pdf

]]> Kamalakshi Mukherjee https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-917 Tue, 12 Nov 2013 08:51:23 -0600 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-917 <![CDATA[Comment by Surajeet]]> Molecular Modelling for Beginners by Alan Hinchliffe ftp://ftp.cecalc.ula.ve/bioinfo/CD-THAS/Presentaciones/modelado/MMFB.pdf

]]> Surajeet https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-839 Fri, 18 Oct 2013 05:27:59 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-839 <![CDATA[Comment by Surajeet]]> Protein-Ligand Docking for Drug Design by Sam Z. Grinter

http://web.missouri.edu/~szg4y4/presentation3.pdf

]]> Surajeet https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-838 Fri, 18 Oct 2013 05:22:53 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-838 <![CDATA[Comment by Surajeet]]> Molecular docking tutorial with Arguslab http://www.ffa.uni-lj.si/fileadmin/datoteke/FK/Gradiva_FK/2011-12/Seminarji/Arguslab_navodila.pdf

]]> Surajeet https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-837 Fri, 18 Oct 2013 05:11:34 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-837 <![CDATA[Comment by Shikha Logwani]]> One of my favourite docking tutorial http://www.molvis.indiana.edu/C687_S99/docking.html

]]> Shikha Logwani https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-835 Fri, 18 Oct 2013 05:09:50 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-835 <![CDATA[Comment by Shikha Logwani]]> Quick­start guide to protein­ligand docking using Rosetta 3.1

http://www.meilerlab.org/jobs/downloadfile/name/rosetta3_ligand_docking.pdf

Ptotein logand docking tutorial

https://www.cs.princeton.edu/courses/archive/fall05/cos597A/lectures/docking1.pdf

]]> Shikha Logwani https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-817 Mon, 07 Oct 2013 15:11:00 -0500 https://bioinformaticsonline.com/bookmarks/view/4887/collection-of-molecular-modelling-and-drug-design-related-tutorial#item-annotation-817 <![CDATA[Comment by Shreya Ganguli]]>  

An informative tutorial for beginners ... http://www.chem.ox.ac.uk/course/cache/

]]> Shreya Ganguli