<![CDATA[BOL: Encode sequencing data freely available to download and use for academic means]]> https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means? https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means Thu, 13 Mar 2014 18:18:08 -0500 https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means <![CDATA[Encode sequencing data freely available to download and use for academic means]]> In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq).

More information:

https://genome.ucsc.edu/ENCODE/pilot.html

 

Address of the bookmark: https://genome.ucsc.edu/ENCODE/

]]> Rahul Agarwal https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means#item-annotation-1303 Sun, 06 Apr 2014 21:14:21 -0500 https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means#item-annotation-1303 <![CDATA[Comment by Neel]]> The annotation file is available at http://www.nimblegen.com/downloads/annotation/hg19/

]]> Neel https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means#item-annotation-1299 Sun, 06 Apr 2014 19:23:47 -0500 https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means#item-annotation-1299 <![CDATA[Comment by Rahul Nayak]]> User can also find some useful ENCODE data at http://www.gencodegenes.org/releases/17.html

]]> Rahul Nayak https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means#item-annotation-1259 Fri, 14 Mar 2014 00:50:40 -0500 https://bioinformaticsonline.com/bookmarks/view/9032/encode-sequencing-data-freely-available-to-download-and-use-for-academic-means#item-annotation-1259 <![CDATA[Comment by Jitendra Narayan]]> You can access the collected papers by exploring the thematic ENCODE threads with topics such as DNA methylation, RNA or machine learning.  http://www.nature.com/encode/#/threads

]]> Jitendra Narayan