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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/11181?offset=1550</link>
	<atom:link href="https://bioinformaticsonline.com/related/11181?offset=1550" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27253/ra-bioinformatics-at-jnu-delhi</guid>
  <pubDate>Tue, 10 May 2016 01:50:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[R.A Bioinformatics at JNU, Delhi]]></title>
  <description><![CDATA[
<p>R.A Jobs opportunity in Jawaharlal Nehru University (JNU) on purely temporary basis</p>

<p>Project Title : "Structural and functional characterization of serine biosynthetic pathway enzymes from Entamoeba histolytica"</p>

<p>No. of Post : 01</p>

<p>Qualification : Ph.D in any computational biology / bioinformatics</p>

<p>Desirable : 1. Experience with docking, simulations and structural biology with proof of publications is preferred. 2. National Eligibility Test cleared [CSIR/UGC] candidate is preferred.</p>

<p>Salary : According to CSIR rules<br />How to apply</p>

<p>The application on plain paper indicating name, date of birth/age, address, essential/technical/professional qualifications. experience, list of publications should reach The Prof. S. Gourinath, Principal Investigator, [Project Director], School of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, on or before 23rd May 2016.</p>

<p>More at http://www.jnu.ac.in/Career/currentjobs.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/36927/restrictiondigest-a-powerful-perl-module-for-simulating-genomic-restriction-digests</guid>
	<pubDate>Tue, 12 Jun 2018 13:17:13 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/36927/restrictiondigest-a-powerful-perl-module-for-simulating-genomic-restriction-digests</link>
	<title><![CDATA[RestrictionDigest: A powerful Perl module for simulating genomic restriction digests]]></title>
	<description><![CDATA[RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the simulation. It can simulate single-enzyme digestion, double-enzyme digestion and size selection process. It can also analyze multiple genomes at one run and generates concise comparison of enzyme(s) performance across the genomes.

For more information, please see the academic paper published online (http://www.sciencedirect.com/science/article/pii/S071734581630001X).<p>Address of the bookmark: <a href="https://github.com/JINPENG-WANG/RestrictionDigest" rel="nofollow">https://github.com/JINPENG-WANG/RestrictionDigest</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40724/the-raku-programming-language</guid>
	<pubDate>Tue, 28 Jan 2020 05:37:17 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40724/the-raku-programming-language</link>
	<title><![CDATA[The Raku Programming Language]]></title>
	<description><![CDATA[<p><span>Raku is a member of the Perl family of programming languages. Formerly known as Perl 6, it was renamed in October 2019. Raku introduces elements of many modern and historical languages. Compatibility with Perl was not a goal, though a compatibility mode is part of the specification.</span><span>&nbsp;</span></p>
<p><span>More at&nbsp;<a href="https://www.raku.org/">https://www.raku.org/</a></span></p><p>Address of the bookmark: <a href="https://www.raku.org/" rel="nofollow">https://www.raku.org/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/2727/download-mutliple-fasta-file-from-ncbi-in-one-go</guid>
	<pubDate>Wed, 21 Aug 2013 08:13:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/2727/download-mutliple-fasta-file-from-ncbi-in-one-go</link>
	<title><![CDATA[Download mutliple fasta file from NCBI in one GO!!]]></title>
	<description><![CDATA[<p>if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs .</p>
<p>Alternatively, use one liner perl script:</p>
<p>perl -ne 'if(/^&gt;(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' GIs.txt &gt;sequence.fasta</p>
<p>where GIs.txt contains&nbsp;a list of GIs or accession IDs.</p>
<p>(from :<a href="http://edwards.sdsu.edu/labsite/index.php/robert?start=5">http://edwards.sdsu.edu/labsite/index.php/robert?start=5</a>)</p><p>Address of the bookmark: <a href="http://edwards.sdsu.edu/labsite/index.php/robert/380-ncbi-sequence-or-fasta-batch-download-using-entrez" rel="nofollow">http://edwards.sdsu.edu/labsite/index.php/robert/380-ncbi-sequence-or-fasta-batch-download-using-entrez</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/33842/awesome-perl-frameworks-libraries-and-software-part-5</guid>
	<pubDate>Fri, 07 Jul 2017 04:12:47 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/33842/awesome-perl-frameworks-libraries-and-software-part-5</link>
	<title><![CDATA[Awesome perl frameworks, libraries and software - PART 5]]></title>
	<description><![CDATA[<ul>
<li><a href="https://github.com/robelix/sub2srt">robelix/sub2srt</a>&nbsp;- subtitle converter</li>
<li><a href="https://github.com/reyjrar/graphite-scripts">reyjrar/graphite-scripts</a>&nbsp;- A Collections of Scripts for Working with Graphite</li>
<li><a href="https://github.com/regilero/check_nginx_status">regilero/check_nginx_status</a>&nbsp;- Nagios check for nginx status report</li>
<li><a href="https://github.com/omniti-labs/resmon">omniti-labs/resmon</a>&nbsp;- resmon</li>
<li><a href="https://github.com/motemen/App-htmlcat">motemen/App-htmlcat</a>&nbsp;- redirect stdin to web browser</li>
<li><a href="https://github.com/moose/Moo">moose/Moo</a>&nbsp;- Minimalist Object Orientation (with Moose compatibility)</li>
<li><a href="https://github.com/miyagawa/fastpass">miyagawa/fastpass</a>&nbsp;- Tiny, XS free, standalone and preforking FastCGI daemon for PSGI</li>
<li><a href="https://github.com/miyagawa/Filesys-Notify-Simple">miyagawa/Filesys-Notify-Simple</a>&nbsp;- Simple and dumb file system watcher</li>
<li><a href="https://github.com/mhop/fhem-mirror">mhop/fhem-mirror</a>&nbsp;- Branch 'master' is a read-only-mirror of svn://svn.code.sf.net/p/fhem/code which is updated once a day. On branch 'enocean' I am going to add some Enocean-Devices</li>
<li><a href="https://github.com/lopnor/Plack-App-DAV">lopnor/Plack-App-DAV</a>&nbsp;- simple DAV server for Plack</li>
<li><a href="https://github.com/kazuho/url_compress">kazuho/url_compress</a>&nbsp;- a static PPM-based URL compressor / decompressor</li>
<li><a href="https://github.com/jnthn/6model">jnthn/6model</a>&nbsp;- Just a place that I'm keeping some meta-model prototyping; anything that matters will make it to another repo (e.g. nqp-rx one or Rakudo one) at some point.</li>
<li><a href="https://github.com/jasonhancock/nagios-puppetdb">jasonhancock/nagios-puppetdb</a>&nbsp;- Nagios plugins and pnp4nagios templates related to Puppetlab's PuppetDB project.</li>
<li><a href="https://github.com/goccy/p5-Compiler-Parser">goccy/p5-Compiler-Parser</a>&nbsp;- Create Abstract Syntax Tree for Perl5</li>
<li><a href="https://github.com/cgutteridge/Grinder">cgutteridge/Grinder</a>&nbsp;- Create RDF data from spreadsheets or CSV</li>
<li><a href="https://github.com/c9s/Plack-Middleware-OAuth">c9s/Plack-Middleware-OAuth</a>&nbsp;- Plack Middleware for OAuth1 and OAuth2</li>
<li><a href="https://github.com/bzip2-cuda/bzip2-cuda">bzip2-cuda/bzip2-cuda</a>&nbsp;- Parallel implementation of bzip2 using cuda</li>
<li><a href="https://github.com/alanstevens/ChocoPackages">alanstevens/ChocoPackages</a>&nbsp;- Chocolatey Nuget Packages</li>
<li><a href="https://github.com/SoylentNews/slashcode">SoylentNews/slashcode</a>&nbsp;- The slashcode repository for SoylentNews. The initial code base was uploaded as it appeared on Sourceforge as of the last commit in September 2009</li>
<li><a href="https://github.com/Miserlou/XSS-Harvest">Miserlou/XSS-Harvest</a>&nbsp;- XSS Weaponization</li>
</ul>]]></description>
	<dc:creator>Neel</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42955/post-doctoral-position-scientist-mfd-in-bioinformatics</guid>
  <pubDate>Mon, 15 Mar 2021 11:34:23 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-doctoral position / Scientist (m/f/d) in Bioinformatics]]></title>
  <description><![CDATA[
<p>The Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V. in Dortmund is looking for a Post-doctoral position / Scientist (m/f/d) in Bioinformatics</p>

<p>More at</p>

<p>https://www.isas.de/files/redaktion/jobs/2021/18.60.1_Postdoc_deNBI_06_21_AS.pdf</p>

<p>https://www.isas.de/en/news/062021-post-doctoral-position-scientist-mfd-in-bioinformatics</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/39913/twinblast-when-two-is-better-than-one</guid>
	<pubDate>Sat, 07 Sep 2019 08:50:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/39913/twinblast-when-two-is-better-than-one</link>
	<title><![CDATA[TwinBLAST: When Two Is Better than One]]></title>
	<description><![CDATA[<p>TwinBLAST is a web-based tool for viewing 2 BLAST reports simultaneouslyside-by-side. It uses ExtJS (www.sencha.com/products/extjs/) to provide 2independently scrollable panels. BioPerl (www.bioperl.org) is used to indexraw BLAST reports and Bio::Graphics is used to draw pictograms of the BLASThits.</p>
<p><a href="https://github.com/IGS/twinblast">https://github.com/IGS/twinblast</a></p>
<p><a href="https://mra.asm.org/content/8/35/e00842-19">https://mra.asm.org/content/8/35/e00842-19</a></p><p>Address of the bookmark: <a href="https://github.com/IGS/twinblast" rel="nofollow">https://github.com/IGS/twinblast</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon</guid>
	<pubDate>Thu, 03 Dec 2015 05:52:09 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon</link>
	<title><![CDATA[ArrayGen Next Generation Genome Browser Coming Soon !!!]]></title>
	<description><![CDATA[<p>The ANG genome browser is a visualization tool, developed by ArrayGen Technologies. This is a fast and an efficient genome browser, built with Javafx and Java swing. ANG genome browser was built for latest next generation sequencing data analysis. It is platform independent and much simpler to use.</p><p>The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM and it can be integrated with other browsers or tools for analysis of genome.</p>]]></description>
	<dc:creator>ArrayGen Technologies</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26559/microscope</guid>
	<pubDate>Fri, 04 Mar 2016 05:26:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26559/microscope</link>
	<title><![CDATA[Microscope]]></title>
	<description><![CDATA[<p>Microscope Platform user documentation.</p>
<p>The MicroScope platform is available at this URL:</p>
<p><a href="https://www.genoscope.cns.fr/agc/microscope">https://www.genoscope.cns.fr/agc/microscope</a></p><p>Address of the bookmark: <a href="http://microscope.readthedocs.org/en/latest/index.html" rel="nofollow">http://microscope.readthedocs.org/en/latest/index.html</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26500/postdoc-at-iiser-tvm</guid>
  <pubDate>Fri, 26 Feb 2016 03:53:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[PostDoc at IISER -TVM]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship/ Research Associateship</p>

<p>Eligibility : M Phil / Phd</p>

<p>Location : Thiruvananthapuram</p>

<p>Last Date : 30 Apr 2016</p>

<p>Hiring Process : Face to Face Interview<br />IISER -TVM </p>

<p>The Postdoctoral Fellowship/Research Associateship is a full-time, contractual position for highly qualified young scientists to carry out research at CCMS, IISER-TVM.</p>

<p>Research areas at the Centre</p>

<p>Quantum Chemistry/ Computational Fluid Dynamics/Condensed Matter Physics (Theory)/Genomics/Genetics/Gravitational Waves</p>

<p>Qualifications: PhD in Bioinformatics / Biophysics / Physics / Astrophysics / Chemistry / Mathematics / Engineering (Mechanical/Aerospace) Those who are in the final stages of their Ph.D. thesis submission are also eligible to apply. However, those candidates must have submitted the thesis at the time of the interview.</p>

<p>Experience: Applicants should have at least three peer reviewed publications and relevant experience in the research area they are applying for.</p>

<p>No. of positions: 5</p>

<p>Age limit: 35 yrs or below. A relaxation of 5 yrs will be applicable to candidates belonging to SC/ST/OBC and women candidates</p>

<p>Salary: The Fellowship carries a remuneration of INR Rs. 5,18,000 - Rs. 5,76,000 per annum (including HRA). The postdoctoral fellowship may not be held concurrently with any other national or international fellowships. It is also not transferable to any other fellowship<br />How to apply</p>

<p>Applications should reach the Head, CCMS, IISER Thiruvananthapuram,CET Campus, Engineering College PO,Thiruvananthapuram 695016 on or before April 30, 2016 by e-mail to ccms@iisertvm.ac.in by mentioning the research area name in the subject line. </p>

<p>More at http://www.iisertvm.ac.in/openings/read_opening/150.phpx</p>
]]></description>
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