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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/11457?offset=200</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/12594/faculty-positions-at-central-university-of-punjab</guid>
  <pubDate>Mon, 07 Jul 2014 23:33:33 -0500</pubDate>
  <link></link>
  <title><![CDATA[Faculty Positions at Central University of Punjab]]></title>
  <description><![CDATA[
<p>Faculty Positions: Rolling/Open Advertisement Advt.No: T-10 (2013)</p>

<p>Pay Scale: Pay Band Rs.15600-39100 with AGP of Rs.6,000/-</p>

<p>Essential Qualifications for Professors, Associate Professors, and Assistant Professors: As per “UGC REGULATIONS ON MINIMUM QUALIFICATIONS FOR APPOINTMENT OF TEACHERS AND OTHER ACADEMIC STAFF IN UNIVERSITIES AND COLLEGES AND MEASURES FOR THE MAINTENANCE OF STANDARDS IN HIGHER EDUCATION 2010“ and the 2nd Amendments to the regulation issued in June 2013.</p>

<p>For details: http://www.ugc.ac.in/oldpdf/regulations/revised_finalugcregulationfinal10.pdf http://www.ugc.ac.in/pdfnews/8539300_English.pdf and University rules.</p>

<p>Procedure to apply:</p>

<p>Application forms along with API form complete in all respect along with necessary documents and application fee of Rs. 500/-. (Rs. 250/- for Scheduled Caste/Scheduled Tribe/Person with disabilities) should be sent to:</p>

<p>Registrar, Central University of Punjab, City Campus, Mansa Road, Bathinda-151001</p>

<p>For more info visit: http://www.centralunipunjab.com/Teaching/Final%20Details-t10-2013.pdf, http://www.centralunipunjab.com/Teaching/Advertisement-t10-2013.jpg</p>

<p>Last Apply Date: 31 Dec 2014</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/12995/national-center-for-bioinformatics-ncb</guid>
  <pubDate>Wed, 23 Jul 2014 14:10:49 -0500</pubDate>
  <link></link>
  <title><![CDATA[National Center for Bioinformatics (NCB)]]></title>
  <description><![CDATA[
<p>NCB is offering M.Phil and Ph.D programs in the area of Bioinformatics. The major goal of NCB is to promote quality training and research in the area of Bioinformatics. Bioinformatics originated as a cross-disciplinary field as the need for computational sections to research problem raised in biomedicine. </p>

<p>More at http://ncb.qau.edu.pk/</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/13337/phd-opportunity-at-universite-de-liege-belgium</guid>
  <pubDate>Sat, 02 Aug 2014 01:12:43 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD opportunity at Université de Liège - Belgium]]></title>
  <description><![CDATA[
<p>PhD opportunity at Université de Liège - Belgium</p>

<p>The Bioinformatics and Systems Biology Unit of Université de Liège (Belgium) is looking for a highly motivated master student with programming skills for a PhD thesis project (4 years, fully funded) with the goal of designing computational tools that use literature, genomic and structural data in order to infer regulatory and metabolic networks.  </p>

<p>Applicants are invited to send their resume and a recommendation letter to Prof. Patrick Meyer (more details at   www.biosys.ulg.ac.be )</p>

<p>For more information : www.biosys.ulg.ac.be</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/36398/tools-for-protein-protein-docking</guid>
	<pubDate>Wed, 25 Apr 2018 05:15:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/36398/tools-for-protein-protein-docking</link>
	<title><![CDATA[Tools for Protein-Protein Docking !]]></title>
	<description><![CDATA[<p>Predicting the structure of protein&ndash;protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexibility and conformational changes. Following are the tools to predict&nbsp;<span>the structure of protein&ndash;protein complexes:</span></p><p><a href="http://www.sbg.bio.ic.ac.uk/docking/index.html" target="_blank">3D-Dock Suite</a></p><p>Global rigid search: FFTShape complementarity and electrostatics</p><p>Re-scoring and clustering. Refinement of interface side-chains</p><p><a href="http://www.sbg.bio.ic.ac.uk/~3dgarden/" target="_blank">3D-Garden</a></p><p>Global rigid search in ensamble</p><p>Shape complementarity and Lennard&ndash;Jones potential</p><p>Side chain and backbone dihedral refinement</p><p><a href="http://www.sdsc.edu/CCMS/DOT/" target="_blank">DOT</a></p><p>Global rigid search: FFTShape complementarity, electrostatics and VDWNone</p><p><a href="http://users.unimi.it/~ddl/escherng/index.htm" target="_blank">Escher NG</a></p><p>Global rigid searchShape complementarity, hydrogen bonds and electrostatic</p><p>Integrated in&nbsp;<a href="http://users.unimi.it/~ddl/vega/download.htm" target="_blank">VEGA</a></p><p><a href="http://vakser.bioinformatics.ku.edu/resources/gramm/gramm1" target="_blank">GRAMM</a>&nbsp;</p><p>Global rigid search: FFT. smooth protein surface representation for soft docking</p><p>Shape complementarity and Lennard-Jones potential</p><p>Clustering of conformations</p><p><a href="http://vakser.bioinformatics.ku.edu/resources/gramm/grammx/" target="_blank">GRAMM-X</a>&nbsp;</p><p>Global rigid search: FFT. smooth protein surface representation for soft docking</p><p>Shape complementarity and Lennard-Jones potentialminimization and re-scoring with multiple filters</p><p><a href="http://www.loria.fr/~ritchied/hex_server/" target="_blank">HEX</a></p><p>Global rigid search: Fourier correlation of spherical harmonics</p><p>Shape complementarity</p><p><a href="http://www.csd.abdn.ac.uk/hex/" target="_blank"></a><a href="http://haddock.chem.uu.nl/Haddock/haddock.php" target="_blank">HADDOCK</a></p><p>Global rigid searchElectrostatic ,VDW and desolvation energy termsMD simulated annealing refinement . Filtering based on external data.&nbsp;</p><p><a href="http://www.molsoft.com/docking.html">ICM</a></p><p>Global rigid search: Monte CarloEmpirical scoring function</p><p>Clustering and selection of conformations. Refinement of interface side-chains and re-scoring</p><p><a href="http://www.weizmann.ac.il/Chemical_Research_Support/molfit/" target="_blank">MolFit&nbsp;</a></p><p>Global rigid search: FFTShape complementarity</p><p>Clustering of good solutions, filtering using&nbsp;<em>a priori&nbsp;</em>information and small, local rigid rotations around selected conformations</p><p><a href="http://bioinfo3d.cs.tau.ac.il/PatchDock/" target="_blank">PatchDock</a></p><p>Global rigid searchShape complementarity and atomic desolvation energy</p><p>Clustering of conformations</p><p><a href="http://inb.bsc.es/gn6/PyDock" target="_blank">PyDock</a></p><p>Global rigid search:FFTShape complementarity</p><p>rescoring by binding electrostatics and desolvation energy</p><p><a href="http://bioinfo3d.cs.tau.ac.il/PatchDock/" target="_blank"></a><a href="http://rosettadock.graylab.jhu.edu/" target="_blank">RosettaDock</a></p><p>Local rigid search: Monte Carlo with low and high resolution structure representation levels</p><p>Different scoring parameters for the different resolutions&nbsp;</p><p><a href="http://zlab.bu.edu/zdock/" target="_blank">ZDOCK</a></p><p>Global rigid search: FFTShape complementarity, desolvation energy, and electrostatics.</p><p>Energy minimization and re-scoringFree for academics</p><p>&nbsp;</p><p>Point to note:</p><p>The proper treatment of flexibility in protein&ndash;protein docking is still an active field of research. You first should analyzed your proteins in order to define their conformational space and then choose the most suitable method for your docking problem.</p>]]></description>
	<dc:creator>Poonam Mahapatra</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/13523/megadock-40</guid>
	<pubDate>Thu, 07 Aug 2014 18:08:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/13523/megadock-40</link>
	<title><![CDATA[MEGADOCK 4.0]]></title>
	<description><![CDATA[<p>An ultra&ndash;high-performance protein&ndash;protein docking software for heterogeneous supercomputers</p>
<p id="p-4"><strong>Summary:</strong> The application of protein&ndash;protein docking in large-scale interactome analysis is a major challenge in structural bioinformatics and requires huge computing resources. In this work, we present MEGADOCK 4.0, an FFT-based docking software that makes extensive use of recent heterogeneous supercomputers and shows powerful, scalable performance of over 97% strong scaling.</p>
<p id="p-5"><strong>Availability and Implementation:</strong> MEGADOCK 4.0 is written in C++ with OpenMPI and NVIDIA CUDA 5.0 (or later) and is freely available to all academic and non-profit users at: <a href="http://www.bi.cs.titech.ac.jp/megadock">http://www.bi.cs.titech.ac.jp/megadock</a>.</p>
<p id="p-6"><strong>Contact:</strong> <a href="mailto:akiyama@cs.titech.ac.jp">akiyama@cs.titech.ac.jp</a></p><p>Address of the bookmark: <a href="http://bioinformatics.oxfordjournals.org/content/early/2014/08/06/bioinformatics.btu532.short" rel="nofollow">http://bioinformatics.oxfordjournals.org/content/early/2014/08/06/bioinformatics.btu532.short</a></p>]]></description>
	<dc:creator>Suleman Khan</dc:creator>
</item>

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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/14904/bioinformatics-jrfsrf-position-at-iari</guid>
  <pubDate>Thu, 04 Sep 2014 04:14:01 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics JRF/SRF position at IARI]]></title>
  <description><![CDATA[
<p>DIVISION OF NEMATOLOGY<br />INDIAN AGRICULTURAL RESEARCH INSTITUTE<br />NEW DELHI 110012<br />Applications are invited for the posts of one Junior<br />Research Fellow and one RA in the DBT funded project entitled “ Plant parasitic nematode genome informatics - insilico resource development”. The project is for a period of three years. </p>

<p>Essential qualifications for JRF<br />: M. Sc. in Bioinformatics with experience in Proteomics, genomics and structural biology. Knowledge of programming language, pearl and database – HTML, CSS,php and Java script.<br />Essential qualifications for Research Associate:<br />MSc/MTech in Bioinformatics with three years experience or Ph.D in Bioinformatics with experience in proteomics, genomics and structural biology. Knowledge of programming language, perl and database<br />– HTML, CSS, Java script. NGS sequence assembly and analysis and algorithm designing.<br />Age limit : 35 years maximum (5 year relaxation for SC/ST and women candidates)<br />Emoluments:<br />JRF: 16,000 + 30% HRA<br />.<br />Res Assoc: Rs22,000 + 30% HRA<br />The post is purely temporary in nature and is co-terminus with the project. The appointment would be initially for one year and may be extended further upon satisfactory performance.<br />Interested candidates<br />should send the duly filled application forms (format in the following page ) so as to reach on or before 20.9.2014 along with all the relevant documents.</p>

<p>More at http://www.iari.res.in/files/JRF_RA-03092014-20140903-135319.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17186/urdip-pune-bioinformatics-srfpa-openings</guid>
  <pubDate>Sat, 20 Sep 2014 20:48:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[URDIP Pune Bioinformatics SRF/PA Openings]]></title>
  <description><![CDATA[
<p>CSIR UNIT FOR RESEARCH AND DEVELOPMENT OF INFORMATION PRODUCTS<br />NCL Campus, S.No.113,114, Pashan, Pune 411 008</p>

<p>ADVERTISEMENT NO. - URDIP/ 5/2014</p>

<p>Learning opportunity for young Science and Engineering professionals to make a career in Information Science Industry CSIR has set up a Unit for Research and Development of Information Products (CSIR-URDIP) at Pune to work in the area of Scientific Informatics (ChemBioinformatics/Patent Informatics/Phytoinformatics/Toxinformatics) and related<br />software development projects.</p>

<p>Applications are invited from CSIR - UGC NET Qualified Candidates for consideration as Project Fellow (PF) and/or Senior Project Fellow (SPF) based on the experience to work on existing and new projects at CSIRURDIP.</p>

<p>Project Fellow</p>

<p>    Remuneration - (Rs. 16,000.00 + 20% HRA)</p>

<p>    M. Sc. In Biochemistry/Microbiology/Bioinformatics [Post-code A02] only with minimum of 55% marks</p>

<p>Senior Project Fellow</p>

<p>    Remuneration - (Rs. 18,000.00 + 20% HRA)</p>

<p>    M. Sc. in Biochemistry/Microbiology/Bioinformatics [Post-code A05] only with minimum of 55% marks plus two years research or relevant informatics experience</p>

<p>Please visit www.urdip.res.in/career.htm to apply online by 30th September, 2014.</p>

<p>Successful candidates who have appeared for NET exam in 2012 and 2013 are only eligible to apply.</p>

<p>Advertisement: http://115.112.95.114/urhr/download/Advt5_2014.pdf</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17189/bioinformatics-svims-project-assistant-walk-in</guid>
  <pubDate>Sat, 20 Sep 2014 21:02:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics SVIMS Project Assistant Walk IN]]></title>
  <description><![CDATA[
<p>SRI VENKATESWARA INSTITUTE OF MEDICAL SCIENCES<br />TIRUPATI, ANDHRA PRADESH, INDIA- 517 507<br />BIOINFORMATICS CENTRE, DEPARTMENT OF BIOINFORMATICS</p>

<p>Eligible candidates are invited for a walk-in-interview for recruitment of Project Assistant in SVIMS Bioinformatics centre under the BTISnet Project entitled “Creation of Bioinformatics Infrastructure Facility for promotion of Biology teaching through Bioinformatics” on 25.09.2014 at 11 AM in SVIMS, Tirupati. The engagement will be made purely on temporary basis for a period of one year and it can be terminated at any time without notice or without assigning any reason thereof by the Coordinator of the Project. The person engaged shall not be entitled for any claim implicit or explicit for absorption in the University.</p>

<p>1. Name of the post : Project Assistant</p>

<p>2. Qualification :<br />i) Essential : MSc Bioinformatics/MTech (Biotechnology/Bioinformatics)</p>

<p>ii) Desirable : Experience in Bioinformatics research work (Preference will be given to candidates  qualified in BINC/UGC/CSIR/NET/GATE)</p>

<p>3. Remuneration : 16000 + 10% HRA for NET/GATE candidates 14000 + 10% HRA for M. Tech / M.Sc. Candidates</p>

<p>4. Place of posting : Tirupati</p>

<p>5. Duration of the Project : One year</p>

<p>Terms and conditions:</p>

<p>1. Candidates are required to submit the Biodata relevant certificates in support of their age and educational qualification etc., before the interview committee, SVIMS University, Tirupati.</p>

<p>2. Candidates called for interview will attend the interview at their own cost.<br />3. Interim enquiries will not be entertained.<br />4. The maximum age limit for Project Assistant is 28 years for general category and 33 years for SC and ST category candidates as on 25th September, 2014.</p>

<p>Advertisement:</p>

<p>http://svr98.ehostpros.com/~svimsb98/Project%20Assistant_notification.pdf</p>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/17501/nieduszynski-group</guid>
  <pubDate>Fri, 26 Sep 2014 19:35:06 -0500</pubDate>
  <link></link>
  <title><![CDATA[Nieduszynski Group]]></title>
  <description><![CDATA[
<p>Complete, accurate replication of the genome is essential for life. All chromosomes in eukaryotic cells must be duplicated and then segregated to daughter cells to ensure genetic integrity and produce the large number of cells that make up a multicellular organism. We are using genetic, genomic and computational methods to understand how chromosome replication is regulated to ensure genome stability. By focusing on the basic biology that underpins cell growth and division we aim to provide new insights that may help our understanding of diseases such as cancer and congenital disorders. </p>

<p>More http://www.nieduszynski.org/index.php<br />http://www.path.ox.ac.uk/research/cell-biology-and-pathology/conrad-nieduszynski-group</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/17751/jrf-in-bioinformatics-inmas-drdodelhi</guid>
  <pubDate>Wed, 01 Oct 2014 07:01:07 -0500</pubDate>
  <link></link>
  <title><![CDATA[JRF in Bioinformatics @ INMAS, DRDO,Delhi]]></title>
  <description><![CDATA[
<p>Institute of Nuclear Medicine and Allied Sciences (INMAS), Delhi under the aegis of Defence Research and Development Organisation (DRDO), is engaged in research and developmental work in radiation sciences, Neuro-Computing and Medical Image Processing. INMAS is looking for meritorious young researchers for pursuing research in the frontier areas at INMAS. The Institute invites applications from young and meritorious Indian nationals who are creative, have passion and desire to pursue R&amp;D in frontier areas. INMAS possesses ambience of a research cum academic institute coupled with an advanced R&amp;D infrastructure in a mission mode. It provides the best infrastructure, motivation and personality development prospects for talented students, dreaming of unparalleled success in their professional endeavors. INMAS provides state of the art research facilities for undertaking pioneering research with defence applications. </p>

<p>JRF (Maximum Tenure‐ Five Years: 2yrs as JRF and 3yrs  as SRF) 	<br />A first class Master’s Degree in Bioinformatics (likely 2 posts) 	<br />Around Rs 16,000/ Plus 30% HRA (as per rules of funding agency)</p>

<p>Applications are invited from candidates possessing the above qualifications. The upper age limit is as on the last date for receipt of application. (5 years relaxation to SC/ST candidates, 3 years to OBC candidates, and other entitled categories as per Govt rules). Actual No. of vacancies may vary.</p>

<p>Application form can be download from the website www.drdo.gov.in and E Mailed to inmashrd@gmail.com.<br />Last date to apply by email is 1700 hrs on 15 Oct 2014<br />Incomplete applications are liable to be rejected.<br />Confirmation will be sent to short-listed candidates through email only<br />Antecedents of selected candidates will be verified.<br />Written Test will be conducted from 0930-1030 hrs. Latecomers will not be considered.<br />Candidates will be required to produce certificates/testimonials in original at the time of interview.<br />It may please be noted that offer of Fellowship does not confer on fellows any right for absorption in DRDO.<br />Candidates should carry photocopy of Application form sent by email with them.<br />No TA/DA will be paid for attending interview &amp; on joining.<br />Last date to apply by email is 1700 hrs on 15 Oct 2014</p>

<p>More at http://drdo.gov.in/drdo/English/jrf29092014.pdf<br />http://drdo.gov.in/drdo/English/index.jsp?pg=inmas29092014.jsp</p>
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