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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/11603?offset=1140</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon</guid>
	<pubDate>Thu, 03 Dec 2015 05:52:09 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/25400/arraygen-next-generation-genome-browser-coming-soon</link>
	<title><![CDATA[ArrayGen Next Generation Genome Browser Coming Soon !!!]]></title>
	<description><![CDATA[<p>The ANG genome browser is a visualization tool, developed by ArrayGen Technologies. This is a fast and an efficient genome browser, built with Javafx and Java swing. ANG genome browser was built for latest next generation sequencing data analysis. It is platform independent and much simpler to use.</p><p>The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM and it can be integrated with other browsers or tools for analysis of genome.</p>]]></description>
	<dc:creator>ArrayGen Technologies</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26559/microscope</guid>
	<pubDate>Fri, 04 Mar 2016 05:26:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26559/microscope</link>
	<title><![CDATA[Microscope]]></title>
	<description><![CDATA[<p>Microscope Platform user documentation.</p>
<p>The MicroScope platform is available at this URL:</p>
<p><a href="https://www.genoscope.cns.fr/agc/microscope">https://www.genoscope.cns.fr/agc/microscope</a></p><p>Address of the bookmark: <a href="http://microscope.readthedocs.org/en/latest/index.html" rel="nofollow">http://microscope.readthedocs.org/en/latest/index.html</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26500/postdoc-at-iiser-tvm</guid>
  <pubDate>Fri, 26 Feb 2016 03:53:05 -0600</pubDate>
  <link></link>
  <title><![CDATA[PostDoc at IISER -TVM]]></title>
  <description><![CDATA[
<p>Postdoctoral Fellowship/ Research Associateship</p>

<p>Eligibility : M Phil / Phd</p>

<p>Location : Thiruvananthapuram</p>

<p>Last Date : 30 Apr 2016</p>

<p>Hiring Process : Face to Face Interview<br />IISER -TVM </p>

<p>The Postdoctoral Fellowship/Research Associateship is a full-time, contractual position for highly qualified young scientists to carry out research at CCMS, IISER-TVM.</p>

<p>Research areas at the Centre</p>

<p>Quantum Chemistry/ Computational Fluid Dynamics/Condensed Matter Physics (Theory)/Genomics/Genetics/Gravitational Waves</p>

<p>Qualifications: PhD in Bioinformatics / Biophysics / Physics / Astrophysics / Chemistry / Mathematics / Engineering (Mechanical/Aerospace) Those who are in the final stages of their Ph.D. thesis submission are also eligible to apply. However, those candidates must have submitted the thesis at the time of the interview.</p>

<p>Experience: Applicants should have at least three peer reviewed publications and relevant experience in the research area they are applying for.</p>

<p>No. of positions: 5</p>

<p>Age limit: 35 yrs or below. A relaxation of 5 yrs will be applicable to candidates belonging to SC/ST/OBC and women candidates</p>

<p>Salary: The Fellowship carries a remuneration of INR Rs. 5,18,000 - Rs. 5,76,000 per annum (including HRA). The postdoctoral fellowship may not be held concurrently with any other national or international fellowships. It is also not transferable to any other fellowship<br />How to apply</p>

<p>Applications should reach the Head, CCMS, IISER Thiruvananthapuram,CET Campus, Engineering College PO,Thiruvananthapuram 695016 on or before April 30, 2016 by e-mail to ccms@iisertvm.ac.in by mentioning the research area name in the subject line. </p>

<p>More at http://www.iisertvm.ac.in/openings/read_opening/150.phpx</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26363/flo</guid>
	<pubDate>Wed, 10 Feb 2016 10:52:32 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26363/flo</link>
	<title><![CDATA[flo]]></title>
	<description><![CDATA[<p>flo - same species annotations lift over pipeline</p>
<p>Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimentally verified) are available on the old assembly.</p>
<p>The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver).</p>
<p>&nbsp;</p>
<p>https://github.com/wurmlab/flo</p><p>Address of the bookmark: <a href="https://github.com/wurmlab/flo" rel="nofollow">https://github.com/wurmlab/flo</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26382/project-assistant-jrf-at-north-eastern-hill-university</guid>
  <pubDate>Fri, 12 Feb 2016 09:23:01 -0600</pubDate>
  <link></link>
  <title><![CDATA[Project Assistant/ JRF at North Eastern Hill University]]></title>
  <description><![CDATA[
<p>Project Assistant/ JRF</p>

<p>Eligibility : ME/M.Tech, Any Graduate, MSc</p>

<p>Location : Shillong</p>

<p>Last Date : 23 Feb 2016</p>

<p>Hiring Process : Face to Face Interview<br />North Eastern Hill University</p>

<p>Project Assistant/ JRF Jobs recruitment in North Eastern Hill University on temporary basis</p>

<p>Project Title : "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcripts and genome information of Orchids in North-East India"</p>

<p>Project Assistant</p>

<p>No. of Post : 01</p>

<p>Qualifications : Graduation</p>

<p>Desirable : Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples.</p>

<p>JRF</p>

<p>No. of Post : 01</p>

<p>Qualifications : M.Tech/M.Sc in Life Sciences/Botany/Biotechnology/ Bioinformatics;</p>

<p>Desirable : Aptitude for Bioinformatics and Computer Programming/ Next generation sequencing data analysis<br />How to apply</p>

<p>The applications through email bicnehu@gmail.com or post must reach the Dr. Devendra Kumar Biswal, Co-Principal Investigator (Co-PI) within 15 days from the date of publication of this advertisement.</p>

<p>More at http://www.nehu.ac.in/Advertisements/projectVacancy.php</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide</guid>
	<pubDate>Thu, 18 Feb 2016 04:50:51 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26414/advanced-bash-scripting-guide</link>
	<title><![CDATA[Advanced Bash-Scripting Guide]]></title>
	<description><![CDATA[<p>This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced level of instruction <em>. . . all the while sneaking in little nuggets of <span>UNIX</span>&reg; wisdom and lore</em>. It serves as a textbook, a manual for self-study, and as a reference and source of knowledge on shell scripting techniques. The exercises and heavily-commented examples invite active reader participation, under the premise that <tt><strong>the only way to really learn scripting is to write scripts</strong></tt>.</p>
<p>This book is suitable for classroom use as a general introduction to programming concepts.</p>
<p>More at http://tldp.org/LDP/abs/html/</p><p>Address of the bookmark: <a href="http://tldp.org/LDP/abs/html/" rel="nofollow">http://tldp.org/LDP/abs/html/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26438/scientist-at-regional-medical-research-centre-icmr-rmrc-port-blair</guid>
  <pubDate>Mon, 22 Feb 2016 04:38:48 -0600</pubDate>
  <link></link>
  <title><![CDATA[Scientist at Regional Medical Research Centre (ICMR), RMRC, Port Blair]]></title>
  <description><![CDATA[
<p>Scientist</p>

<p>Eligibility : MSc, M Phil / Phd, BE/B.Tech</p>

<p>Location : Delhi</p>

<p>Last Date : 08 Mar 2016</p>

<p>Hiring Process : Walk - In<br />Regional Medical Research Centre - </p>

<p>Notification Order No.1-51/Proj/RMRC/PB/</p>

<p>Scientist – II (Post Code: BIC-II) job position in Regional Medical Research Centre (ICMR)</p>

<p>Essential Qualification: 1 st class Master’s degree in Bioinformatics / Computational Biology.  B.E / B.Tech (Bioinformatics / Computer Science / Biotechnology) OR 2nd Class M.Sc. with Ph.D. in Bioinformatics / Computational Biology / Life Science.</p>

<p>Desirable Qualification:  Post-doctoral research experience in Bioinformatics / Computational Biology / Computer Science / Life Science at a recognized institution.  Experience in handling and analyzing sequencing data.  Experience in scripting languages (PERL/PYTHON) etc./ Statistical software.  Experience in developing research projects.</p>

<p>Number of Post: 1 UR</p>

<p>Place of Posting: RMRC, Port Blair </p>

<p>Age Limit: 40 years</p>

<p>Pay Scale : Rs.45,954<br />How to apply</p>

<p>Interested candidates are invited to submit applications along with copies of all the certificates of educational qualifications, date of birth, working experience etc . on the affixing a passport size photograph by Application Format to attend a walk-in interview on 8th March 2016 at 10:30 AM.</p>

<p>More at http://www.icmr.nic.in/icmrnews/port%20blair%20Bioinf%2003-2016.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26562/jrf-at-icgeb</guid>
  <pubDate>Fri, 04 Mar 2016 05:34:42 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF at ICGEB]]></title>
  <description><![CDATA[
<p>Vacancy Notice PU/TS/01-16</p>

<p>JRF jobs in International Centre for Genetic Engineering and Biotechnology</p>

<p>Area of research: Computational analysis of protein-protein interactions and metabolic reconstruction of pathways</p>

<p>Qualification : Suitable candidate must have completed Masters in Computer Science/Physics/Mathematics/Bioinformatics or PG diploma in Bioinformatics with very sound programming skills shown in the form of completed project or paper. Programming Skill required: Java/perl/python or any other scripting language and working knowledge of MySQL. Candidate should have some familiarity with R statistical package.</p>

<p>The salary will be as per the guidelines of DBT/DST, based on qualification and experience.</p>

<p>How to apply</p>

<p>Interested candidates may send application along with CV via email to hemant@icgeb.res.in  (Dr. Hemant Ritturaj Kushwaha) on or before 08/03/2016. Candidates applying through Email must mention “Application for JRF” in their subject line.</p>

<p>More at http://www.icgeb.org/vacancies.html</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27113/picard</guid>
	<pubDate>Fri, 29 Apr 2016 08:21:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27113/picard</link>
	<title><![CDATA[Picard]]></title>
	<description><![CDATA[<p>Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the <a href="http://samtools.github.io/hts-specs/">Hts-specs</a> repository. See especially the <a href="http://samtools.github.io/hts-specs/SAMv1.pdf">SAM specification</a> and the <a href="http://samtools.github.io/hts-specs/VCFv4.3.pdf">VCF specification</a>.</p>
<p>Note that the information on this page is targeted at end-users. For developers, the source code, building instructions and implementation/development resources are available on <a href="https://github.com/broadinstitute/picard">GitHub</a>.</p>
<p>The Picard toolkit is open-source under the <a href="https://tldrlegal.com/license/mit-license">MIT license</a> and free for all uses.</p>
<p>Enjoy!</p><p>Address of the bookmark: <a href="http://broadinstitute.github.io/picard/" rel="nofollow">http://broadinstitute.github.io/picard/</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26712/post-doctoral-fellow-jobs-opportunity-in-srm-university</guid>
  <pubDate>Thu, 17 Mar 2016 11:20:14 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-Doctoral Fellow Jobs opportunity in SRM University]]></title>
  <description><![CDATA[
<p>Post-Doctoral Fellow Jobs opportunity in SRM University</p>

<p>Essential qualification : Ph.D. in Bioinformatics/Biotechnology/Genetics/Computational Biology.Understanding of genomics data and advanced knowledge of Java, and C/C++ as the programming languages and the scripting language like perl and/or Python, SQL is preferred. Experience in High Performance Computing, data architecture, database development is desirable</p>

<p>Fellowship: Rs 35,000 /-<br /> <br />How to apply</p>

<p>Candidates are requested to send their CV, and a brief summary of research experience by e-mail careers.genetics@ktr.srmuniv.ac.in  on or before 30/03/2016.</p>

<p>More at http://www.srmuniv.ac.in/jobs-applications-for-position-of-post-doctoral-fellow</p>
]]></description>
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