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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/11644?offset=40</link>
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	<description><![CDATA[]]></description>
	
	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/42271/mcclintock-meta-pipeline-to-identify-transposable-element-insertions-using-next-generation-sequencing-data</guid>
	<pubDate>Tue, 27 Oct 2020 00:21:18 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/42271/mcclintock-meta-pipeline-to-identify-transposable-element-insertions-using-next-generation-sequencing-data</link>
	<title><![CDATA[McClintock: Meta-pipeline to identify transposable element insertions using next generation sequencing data]]></title>
	<description><![CDATA[<p><span>an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (</span><a href="https://github.com/bergmanlab/mcclintock">https://github.com/bergmanlab/mcclintock</a><span>), which automatically runs and standardizes output for multiple TE detection methods. We demonstrate the utility of McClintock by evaluating six TE detection methods using simulated and real genome data from the model microbial eukaryote,&nbsp;</span><em>Saccharomyces cerevisiae</em><span>.&nbsp;</span></p><p>Address of the bookmark: <a href="https://github.com/bergmanlab/mcclintock" rel="nofollow">https://github.com/bergmanlab/mcclintock</a></p>]]></description>
	<dc:creator>BioStar</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44659/figeno-tool-for-plotting-sequencing-data-along-genomic-coordinates</guid>
	<pubDate>Tue, 17 Sep 2024 02:28:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44659/figeno-tool-for-plotting-sequencing-data-along-genomic-coordinates</link>
	<title><![CDATA[Figeno: Tool for plotting sequencing data along genomic coordinates.]]></title>
	<description><![CDATA[<p><span>Tool for plotting sequencing data along genomic coordinates.</span></p>
<div>
<pre><code>FIGENO is a
  FIGure
    GENerator
for GENOmics</code></pre>
</div>
<p dir="auto">With figeno, you can plot various types of sequencing data along genomic coordinates. Video overview:&nbsp;<a href="https://www.youtube.com/watch?v=h1cBeXoSYTA">https://www.youtube.com/watch?v=h1cBeXoSYTA</a>.</p>
<p dir="auto"><a href="https://github.com/CompEpigen/figeno/blob/main/docs/content/images/figeno.png" target="_blank"><img src="https://github.com/CompEpigen/figeno/raw/main/docs/content/images/figeno.png" alt="figeno" style="border: 0px;"></a></p><p>Address of the bookmark: <a href="https://github.com/CompEpigen/figeno" rel="nofollow">https://github.com/CompEpigen/figeno</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/9627/brainspan-atlas-of-the-developing-human-brain</guid>
	<pubDate>Sun, 06 Apr 2014 18:43:00 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/9627/brainspan-atlas-of-the-developing-human-brain</link>
	<title><![CDATA[BrainSpan Atlas of the Developing Human Brain]]></title>
	<description><![CDATA[<p><span><strong>The BrainSpan atlas</strong>- web source for revealing transcriptional mechanisms involved in human brain development.</span></p>
<p><span><strong>Article</strong>:</span></p>
<p><span>http://www.nbcnews.com/science/science-news/maps-unborn-human-brains-point-medical-frontiers-n71336</span></p>
<p><span><strong>Paper</strong>:</span></p>
<p><span>http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13185.html</span></p><p>Address of the bookmark: <a href="http://brainspan.org/static/home" rel="nofollow">http://brainspan.org/static/home</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/11528/post-doctoral-research-assistant-in-genetics</guid>
  <pubDate>Thu, 05 Jun 2014 16:01:39 -0500</pubDate>
  <link></link>
  <title><![CDATA[Post-doctoral Research Assistant in Genetics]]></title>
  <description><![CDATA[
<p>Post-doctoral Research Assistant in Genetics<br />Camden, North London<br />£31.1K per annum inclusive of London Weighting</p>

<p>This is a fixed term post for 36 months.</p>

<p>We wish to recruit a highly motivated, postdoctoral scientist to carry out a BBSRC funded project in the laboratory of Dr. Denis Larkin. The project is focused on developing and applying new algorithms to study genome and chromosome evolution in birds, mammals and other vertebrate species using whole-genome sequences and existing algorithms. The post holder will use cutting edge computational and laboratory approaches to generate chromosomal assemblies for sequenced genomes, study chromosomal structures and genome differences between bird and other vertebrate species in attempt to identify species- and clade-specific genome signatures.</p>

<p>Applicants must have a Ph.D. and a track record of success, as indicated by first-author publications in international journals. They must possess excellent organisation skills and be capable of individual initiative and of interacting as part of a team. Applicants with extensive practical experience in bioinformatics or computer science, programming, visualization, handling of large data sets, high-performance computing are encouraged to apply. The post will involve collaboration with a wide range of academic partners both within the UK, EU and worldwide. In addition to leading their own project the post holder will have opportunities to contribute to multiple international genome initiatives.</p>

<p>Experience in programming, bioinformatics and comparative genome analysis is essential. Applicants should have a minimum of a degree and preferably a higher degree in a relevant subject.</p>

<p>The Royal Veterinary College has the largest range of veterinary, para-veterinary and animal science undergraduate and postgraduate courses of any veterinary school in the world and is one of the largest veterinary schools in Europe.</p>

<p>Prospective applicants are encouraged to contact Dr. Denis Larkin, Comparative Biomedical Sciences Department on +442071211906 or email: dlarkin@rvc.ac.uk</p>

<p>We offer a generous reward package.</p>

<p>For further information and to apply on-line please visit our website: www.rvc.ac.uk<br />Job reference CBS-0025-14A</p>

<p>Closing date: 4 July 2014<br />Interviews are likely to be held in July 2014</p>

<p>We promote equality of opportunity and diversity within the workplace and welcome applications from all sections of the community.</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/5401/the-minerva-research-group-for-bioinformatics-janet-kelso</guid>
  <pubDate>Wed, 09 Oct 2013 12:57:45 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Minerva Research Group for Bioinformatics (Janet Kelso)]]></title>
  <description><![CDATA[
<p>The focus of this group is to use computational approaches to gain an insight into genome evolution in primates.</p>

<p>PNAS papers:<br />http://www.pnas.org/search?author1=Janet+Kelso&amp;sortspec=date&amp;submit=Submit</p>

<p>Jobs:<br />http://www.eva.mpg.de/genetics/bioinformatics/jobs.html</p>

<p>Contact:<br />Kelso Group<br />Department of Evolutionary Genetics<br />Max Planck Institute for Evolutionary Anthropology<br />Deutscher Platz 6<br />04103 Leipzig<br />Germany<br />Email: kelso@eva.mpg.de</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/933/world-of-omics</guid>
	<pubDate>Tue, 16 Jul 2013 17:11:48 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/933/world-of-omics</link>
	<title><![CDATA[World of Omics]]></title>
	<description><![CDATA[<p>How many variants of "omics" techniques presently in use ?</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4100/should-you-get-sequenced-not-all-bad-genes-predict-disease</guid>
	<pubDate>Thu, 29 Aug 2013 15:10:53 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4100/should-you-get-sequenced-not-all-bad-genes-predict-disease</link>
	<title><![CDATA[Should you get sequenced? Not all bad genes predict disease]]></title>
	<description><![CDATA[<p><span>&ldquo;What we really don&rsquo;t know yet is whether the predictive aspects of the genome are going to turn out to be beneficial or potentially harmful&rdquo;</span></p>
<p><span><span>&ldquo;As we roll out genomic medicine we are fighting against this society-wide misconception that having the bad gene means you&rsquo;re going to get the disease. That&rsquo;s only true in a very few cases.&rdquo;</span></span></p>
<p><span><span><strong>Source</strong>:Today Health</span></span></p><p>Address of the bookmark: <a href="http://www.today.com/health/should-you-get-sequenced-not-all-bad-genes-predict-disease-8C11017154" rel="nofollow">http://www.today.com/health/should-you-get-sequenced-not-all-bad-genes-predict-disease-8C11017154</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/4183/320000-viruses-in-mammals-yet-to-sequenced-in-future</guid>
	<pubDate>Tue, 03 Sep 2013 08:35:30 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/4183/320000-viruses-in-mammals-yet-to-sequenced-in-future</link>
	<title><![CDATA[320000 viruses in mammals yet to sequenced in future!!!]]></title>
	<description><![CDATA[<p>With current biological technique improvements, finally it is now possible to look at millions of unknown viruses at genomic level and understand the mechanism. According to available data, close to 70 per cent of emerging viral diseases such as HIV/AIDS, West Nile, Ebola, SARS, and influenza, are zoonoses - infections of animals that cross into humans.</p><p>To address the challenges of describing and estimating virodiversity, a team of investigators from Center for Infection and Immunity (CII) and EcoHealth Alliance began in jungles of Bangladesh - home to the flying fox.</p><p>Reference:</p><p><a href="http://economictimes.indiatimes.com/news/news-by-industry/et-cetera/mammals-harbour-at-least-320000-new-viruses/articleshow/22253268.cms">http://economictimes.indiatimes.com/news/news-by-industry/et-cetera/mammals-harbour-at-least-320000-new-viruses/articleshow/22253268.cms</a></p><p><a href="http://www.bbc.co.uk/news/science-environment-23932400">http://www.bbc.co.uk/news/science-environment-23932400</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/6130/rna-bioinformatics-and-high-throughput-analysis-jena</guid>
  <pubDate>Sat, 09 Nov 2013 20:03:56 -0600</pubDate>
  <link></link>
  <title><![CDATA[RNA Bioinformatics and High Throughput Analysis Jena]]></title>
  <description><![CDATA[
<p>Research Topics:</p>

<p>High Throughput Sequencing Analysis<br />Comparative Genomics<br />Identification and Annotation of Non-coding RNAs<br />Bioinformatic Analysis and System Biology of Viruses<br />Coevolution of Proteins and RNAs<br />Algorithmic Bioinformatics<br />Phylogenetic Analysis</p>

<p>http://www.rna.uni-jena.de/index.php</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/10093/bio-rad-acquires-gnubio</guid>
	<pubDate>Sat, 19 Apr 2014 10:36:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/10093/bio-rad-acquires-gnubio</link>
	<title><![CDATA[Bio-Rad Acquires GnuBIO]]></title>
	<description><![CDATA[<p>http://www.businesswire.com/news/home/20140411005331/en/Bio-Rad-Acquires-GnuBIO-Developer-Droplet-Based-DNA-Sequencing#.U1KXnPm1b8o</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

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