<![CDATA[BOL: Related items]]> https://bioinformaticsonline.com/related/13226?offset=1190 https://bioinformaticsonline.com/researchlabs/view/44400/pevzner-lab Thu, 02 Nov 2023 05:39:26 -0500 <![CDATA[Pevzner Lab !]]> The laboratory works on genome sequencing, immunoproteogenomics, antibiotics sequencing, and comparative genomics - computational technologies that enabled new applications and allowed scientists to attack biological problems that remained beyond the reach of previous techniques.

https://bioalgorithms.ucsd.edu/research4.html

]]> https://bioinformaticsonline.com/researchlabs/view/852/queensland-centre-for-medical-genomics-grimmond-lab Sun, 14 Jul 2013 11:58:34 -0500 <![CDATA[Queensland Centre for Medical Genomics, Grimmond Lab]]> Queensland Centre for Medical Genomics

Research Area:
pancreatic cancer; ovarian cancer; prostate cancer; bowel cancer; brain cancer; endometrial cancer; breast cancer; personalised medicine; high-throughput genomics

Link @ http://www.imb.uq.edu.au/sean-grimmond

]]> https://bioinformaticsonline.com/opportunity/view/4725/complex-systems-from-physics-to-biology-october-15-16-2013-at-jnu-convention-center Mon, 23 Sep 2013 10:17:17 -0500 <![CDATA[Complex Systems: From Physics to Biology October 15-16 2013 at JNU Convention Center]]> The symposium intents to focus on complex systems arising in a variety of settings in physics and biology. In particular, applications of the concepts of physics to biological sciences will be the major theme of this meeting.

Selected Topics:

Cluster Dynamics
Non-equilibrium Statistical Mechanics
Forced Systems
Hamiltonian Dynamics
Synchronization & Control
Genomics & Systems Biology
Computational Neuroscience
Econophysics

More @ http://www.jnu.ac.in/Conference/SCS2013/

]]> https://bioinformaticsonline.com/researchlabs/view/863/rolland-lagan-lab Sun, 14 Jul 2013 12:57:57 -0500 <![CDATA[Rolland-Lagan lab]]> The Rolland-Lagan lab at the University of Ottawa is specializing in computational and developmental biology. We use a combination of experimental work, microscopy, image analysis and computer simulations to explore developmental mechanisms in two and three dimensions.

Research Area

Developmental biology, Computational biology, Simulation modeling, Image data analysis

Link @ http://mysite.science.uottawa.ca/arolland/index.html

]]> https://bioinformaticsonline.com/opportunity/view/5663/network-analysis-indian-statistical-institute Wed, 16 Oct 2013 08:06:50 -0500 <![CDATA[Network Analysis @ Indian Statistical Institute]]> Indian Statistical Institute Kolkata invites applications for the following posts

2013 Oct Advertisement from Indian Statistical Institute

Post: Network Analysis

No. of Positions: 01

Educational Qualifications:

Candidate should have passed BE/B.Tech Or Equivalent in Computer Science / Electrical Engineering / Electronics / Information Technology / Bioinformatics / Biotechnology with throughout first Class
Experience:

(details of experience required)
Pay Scale: INR Rs.16000-20000/-P.M.

Walk-In-Interview : 22 Oct 2013 at 10:30 AM

Download Official Notification:
http://www.isical.ac.in/JobApplicationFiles/MIU_0310201311433700.pdf

]]> https://bioinformaticsonline.com/file/view/18653/genetic-code-amino-acid Sun, 26 Oct 2014 07:45:58 -0500 https://bioinformaticsonline.com/file/view/18653/genetic-code-amino-acid <![CDATA[Genetic code - Amino Acid]]> The genetic code consists of 64 triplets of nucleotides. These triplets are called codons.With three exceptions, each codon encodes for one of the 20 amino acids used in the synthesis of proteins. That produces some redundancy in the code: most of the amino acids being encoded by more than one codon.

The image summarise all in one.

More at http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/C/Codons.html

]]> Poonam Mahapatra https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture Fri, 27 Sep 2013 04:24:45 -0500 https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture <![CDATA[Molecular Genetics Lecture]]> "Robert Sapolsky makes interdisciplinary connections between behavioral biology and molecular genetic influences. He relates protein synthesis and point mutations to microevolutionary change, and discusses conflicting theories of gradualism and punctuated equilibrium and the influence of epigenetics on development theories." 

"Robert Sapolsky is an American neuroendocrinologist, professor of biology, neuroscience, and neurosurgery at Stanford University, researcher and author" ----Wikipedia

Address of the bookmark: http://www.youtube.com/watch?v=_dRXA1_e30o

]]> Rahul Agarwal https://bioinformaticsonline.com/opportunity/view/42804/one-year-position-for-a-bioinformatician-computational-biologist-in-population-genetics Fri, 05 Feb 2021 11:19:02 -0600 <![CDATA[One-year position for a bioinformatician / computational biologist in population genetics]]> The successful candidate will work as support staff mainly in the development, application and maintenance of pipelines for handling large omics datasets (including whole-genome sequences, high-density genotypes and mRNA sequences). These pipelines cover pre-processing of data, statistical analyses and genome bioinformatics. The postholder will also provide support in producing high-level graphic representations of
these data and of results from their analysis. Our team is part of UMR
7268 ADES research unit (Anthropologie bio-culturelle, Droit, Ethique
et Sant=E9), located at the Timone Faculty of Medicine (Aix-Marseille
University, 13005 Marseille).

JOB QUALIFICATION
- PhD/Engineer/MSc in bioinformatics, biostatistics, genetics/genomics
or any related field.
- Advanced knowledge of Bash/Perl scripting and job management on a Unix
HPC and in at least one basic language for data
manipulation/statistics (such as R/Python/Matlab) are required.
- Knowledge of at least one programming language (e.g. C), experience
processing -omics data or skills in advanced graphical representation
of data would be a plus.

DURATION
1 year, not extensible

SALARY
Gross salary is commensurate with experience and grade (MSc from
1,882=80/month and PhD/equivalent from 2,099=80/month).

APPLICATIONS/OPENING
Please send a motivation letter, a CV and the names of two referees to
pierre.faux@univ-amu.fr. The expected starting date is April 1st, 2021;
the job offer will however remain opened until the position is filled.

Pierre Faux

]]> https://bioinformaticsonline.com/bookmarks/view/41222/best-practices-for-variant-calling-with-the-gatk Sat, 22 Feb 2020 03:07:31 -0600 https://bioinformaticsonline.com/bookmarks/view/41222/best-practices-for-variant-calling-with-the-gatk <![CDATA[Best Practices for Variant Calling with the GATK]]> The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broad’s Genome Analysis Toolkit (GATK) was version 3.3.

03/19/15 Introduction to High-Throughput Sequencing data formats and methods Joel Thibault PDF Video
03/19/15 Introduction to the GATK Geraldine Van der Auwera PDF Video
03/19/15 Mapping, processing, and duplicate marking with Picard tools Matt Sooknah PDF Video
03/19/15 Mapping and processing RNAseq Ami Levy-Moonshine PDF Video
03/19/15 Indel realignment Mark Fleharty PDF Video
03/19/15 Base quality score recalibration David Roazen PDF Video
03/19/15 Introduction to variant discovery: calling cohorts Louis Bergelson PDF Video
03/19/15 Variant calling and joint genotyping Sheila Chandran PDF Video
03/19/15 Variant quality score recalibration Bertrand Haas PDF Video
03/19/15 Introduction to working with variants Yossi Farjoun PDF Video
03/19/15 Genotype refinement Laura Gauthier PDF Video
03/19/15 Annotation and variant evaluation David Benjamin PDF Video

Address of the bookmark: https://www.broadinstitute.org/partnerships/education/broade/best-practices-variant-calling-gatk-1

]]> biogeek https://bioinformaticsonline.com/bookmarks/view/44622/variant-calling-resequencing-based-genome-inference Wed, 31 Jul 2024 02:02:24 -0500 https://bioinformaticsonline.com/bookmarks/view/44622/variant-calling-resequencing-based-genome-inference <![CDATA[Variant Calling Resequencing-Based Genome Inference]]> Variant Calling - Resequencing-Based Genome Inference

Erik Garrison
University of Tennessee Health Science Center
Workshop on Genomics - Český Krumlov
January 12, 2024

https://evomics.org/wp-content/uploads/2024/01/Variant-calling-Workshop-on-Genomics-2024-Cesky-Krumlov.pdf

Address of the bookmark: https://evomics.org/wp-content/uploads/2024/01/Variant-calling-Workshop-on-Genomics-2024-Cesky-Krumlov.pdf

]]> Abhi