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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/13226?offset=990</link>
	<atom:link href="https://bioinformaticsonline.com/related/13226?offset=990" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/4107/natasa-przulj-lab</guid>
  <pubDate>Fri, 30 Aug 2013 06:29:17 -0500</pubDate>
  <link></link>
  <title><![CDATA[Nataša Pržulj Lab]]></title>
  <description><![CDATA[
<p>Nataša Pržulj Lab's research involves applications of graph theory, mathematical modeling, and computational techniques to solving large-scale problems in computational and systems biology.They are interested in computational and theoretical solutions to practical problems in many areas of systems biology, planar cell polarity, proteomics, cancer informatics, and drug discovery and design.</p>

<p>More at http://www.doc.ic.ac.uk/~natasha/index.html</p>
]]></description>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24984/ra-bioinformatics-at-nii</guid>
  <pubDate>Thu, 22 Oct 2015 01:56:26 -0500</pubDate>
  <link></link>
  <title><![CDATA[RA Bioinformatics at NII]]></title>
  <description><![CDATA[
<p>NATIONAL INSTITUTE OF IMMUNOLOGY</p>

<p>NEW DELHI-110067</p>

<p>Applications are invited for the position of Research Associate (RA) for the following time-bound sponsored project as per the details given below:</p>

<p>1. BTIS project entitled, “National Infrastructural Facility in the Area of Immunology” funded by DBT</p>

<p>Research Associate (One Position only)</p>

<p>Dr. Debasisa Mohanty Staff Scientist-VI deb@nii.res.in</p>

<p>Educational Qualifications: Ph.D in Bioinformatics or Biological Sciences or Biotechnology with research experience and publication record in indexed peer reviewed journals in the area of bioinformatics or computational biology.</p>

<p>Emoluments: The selected candidates will draw consolidated emoluments as per Institute Rules, depending upon qualifications &amp; experience Research Associate: Rs. 36,000/- per month plus 30% HRA</p>

<p>Job description &amp; Desired Knowledge: The candidate should be well versed in Programming in PERL/C++, HTML, CGI, web sever and portal development, computational analysis of protein structure &amp; function, molecular dynamics simulations and use of high performance computing systems.</p>

<p>General Terms &amp; Conditions:-</p>

<p>1. The candidates selected for the above posts will be on contract for one year or duration of the project whichever is shorter, at a time.</p>

<p>2. No hostel/ housing facility will be provided.</p>

<p>3. Applicants may clearly mention the category they belong to i.e. SC/ST/OBC/PH and attach documentary proof of the same.</p>

<p>4. No TA/DA will be paid for attending the interview, if called for.</p>

<p>5. Apart from sending application in the prescribed format given below, candidates should send complete Curriculum Vitae along with the names of three referees. Curriculum Vitae should contain details of the experimental expertise and list of publications. 6. Canvassing in any form will be a disqualification.</p>

<p>HOW TO APPLY Interested candidates may apply directly, STRICTLY IN THE PRESCRIBED FORMAT GIVEN BELOW, through e-mail, to the Investigator of the project, clearly indicating the name of the project along with their complete C.V., Email ID, fax numbers, telephone numbers. Only Short listed candidates will be called for interview and they required to submit attested copies of all their certificates and a Demand Draft of Rs 100/- drawn on Canara Bank or Indian Bank payable at Delhi/New Delhi in favour of the Director, NII (SC/ST/PH and Women candidates are exempted from payment of fees) subject to submission of documentary proof), at the time of interview. (E-MAIL APPLICATIONS SHOULD MENTION BTIS-RA 2015 IN THE SUBJECT LINE)</p>

<p>LAST DATE OF RECEIPT OF APPLICATIONS: 29th October, 2015</p>

<p>Advertisement:</p>

<p>www1.nii.res.in/sites/default/files/projectappointments-Dr.Mohanty-29oct2015.pdf</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/5255/walk-in-interview-indian-agricultural-statistics-research-institute</guid>
  <pubDate>Wed, 02 Oct 2013 15:40:17 -0500</pubDate>
  <link></link>
  <title><![CDATA[Walk-in-Interview @ Indian Agricultural Statistics Research Institute]]></title>
  <description><![CDATA[
<p>Indian Agricultural Statistics Research Institute<br />Library Avenue, Pusa, New Delhi – 110012</p>

<p>Walk-in-Interview</p>

<p>Walk-in-interview will be held on October 5, 2013 at 10:00 A.M. at IASRI, New Delhi for a project “A New Distributed Computing Framework for Data Mining” funded by Department of Electronics and Information Technology, Government of India for the following posts. The appointment will be on contractual basis upto 14th October, 2015 or till the termination of the project whichever is earlier and the incumbent shall not have any claim for regular appointment under ICAR.</p>

<p>Research Associate</p>

<p>    Ph.D. in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application or equivalent or</p>

<p>    Post-Graduation in Bioinformatics/ Agricultural Statistics/ Statistics/ Computer Science/ Computer Application or equivalent with 1st Division and at least two years of research experience</p>

<p>     Knowledge of Statistical Analysis /Bioinformatics tools for computational genomics.</p>

<p>     Knowledge of R/Perl programming language</p>

<p>Research Associate</p>

<p>    Ph.D. in Computer Science/ Computer Application / Bioinformatics/ Agricultural<br />    Statistics/ Statistics or equivalent or</p>

<p>    Post-Graduation in Computer Science/ Computer Application /Bioinformatics/ Agricultural Statistics/ Statistics or equivalent with 1st Division and at least two years of research experience</p>

<p>     Expertise in Java programming.<br />     Knowledge of system administration and networking under Linux environment.<br />     Knowledge of parallel programming and cluster computing.</p>

<p>Emoluments for Research Associate: Consolidated Rs:24000/- per month + HRA (for Ph.D. Degree holders) and Rs:23000/- per month + HRA (for Master’s Degree holders)</p>

<p>Age Limit: Age should be not more than 40 years (5 years relaxation for  SC/ST/women candidates and 3 years for OBC candidates as on date of interview).</p>

<p>Interested candidates are requested to appear for Walk-in-Interview on the date and time as specified above in Room No. 106, Training Cum Administrative Block of the Institute along with their application giving bio-data with attested copies of certificates, degrees, testimonials, etc. and one passport size photograph.</p>

<p>Original certificates/ Degrees are needed to be produced at the time of interview.</p>

<p>No T.A. /D.A. will be paid for appearing in the interview.</p>

<p>Advertisement: http://www.iasri.res.in/employment/employment.htm</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/1897/genetic-test-in-india</guid>
	<pubDate>Sun, 11 Aug 2013 10:54:35 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/1897/genetic-test-in-india</link>
	<title><![CDATA[Genetic Test in India]]></title>
	<description><![CDATA[<p>1.<strong>Xcode Life Sciences Pvt. Ltd.</strong><br /><span>6B, Eldorado,&nbsp;</span><br /><span>112, Nungambakkam High Road,</span><br /><span>Nungambakkam, Chennai 600034</span><br /><span>Tamil Nadu, India&nbsp;</span></p><p>2.<span><strong>Mapmygenome&trade;</strong><br /></span><span>Royal Demeure,HUDA Techno Enclave,<br />Plot No. 12/2, Sector-1 500 081&nbsp;<br />Madhapur,Hyderabad<br />AP, India</span></p><p>3.<strong>&nbsp;DNA Labs India</strong></p><p><strong><a href="http://www.dnalabsindia.com/lab.php">http://www.dnalabsindia.com/lab.php</a></strong></p><p>&nbsp;</p><p>4.<strong>MedGenome Labs Pvt Ltd</strong><br /><span>(Division of SciGenom Labs Pvt Ltd.)</span><br /><span>Plot no: 43A,SDF, 3rd floor</span><br /><span>A Block,CSEZ, Kakanad, Cochin</span><br /><span>Kerala - 682037&nbsp;</span><br /><span>Phone: 0484 - 2413399</span><br /><span>Fax: 0484 - 2413398</span><br /><span>Email:&nbsp;</span><a href="mailto:info@medgenome.com">info@medgenome.com</a></p><p>5.<strong>Narayana Nethralaya</strong></p><p><span>Narayana Hrudayalaya Campus</span><br /><span>Narayana Health City</span><br /><span># 258/A, Bommasandra, Hosur Road,&nbsp;</span><br /><span>Bangalore - 560 099 - INDIA.</span><br /><span>TEL: +91-80-66660655-0658&nbsp;</span><br /><span>FAX: +91-80-66660650&nbsp;</span><br /><span>Mobile: 9902 821128 (Emergency Only)</span><br /><span>e-mail:&nbsp;</span><a href="mailto:info@narayananethralaya.com">info@narayananethralaya.com</a></p><p>6.<strong>BioAxis DNA Research Centre Private Limited</strong><br />13-51,Sri Lakshmi Nagar colony,<br />Besides Big Bazar, Near Kamineni Hospitals<br />GSI Post BandalGuda (L B Nagar) Hydeabad-500068<br />Andhra Pradesh (<strong>India</strong>).<br />Phone :&nbsp;+91-40-24034503/+91-9246338983</p><p>7.<strong>Gene Guiide</strong></p><p>8th Floor, Embassy Towers, 7 Bungalows Rd, Versova, Andheri West, Mumbai-61&nbsp;<br />&nbsp;09167 117799&nbsp;<br />&nbsp;<a href="mailto:info@geneguiide.com" target="_blank">info@geneguiide.com</a>&nbsp;</p><p>See more at: http://www.geneguiide.com</p><p>8.<strong>INDIAN BIOSCIENCES</strong><br />Regd. Office:<br />G-2 (Ground Floor Rear), Kailash Colony, New Delhi - 110048, India.<br />Phone: +91 (0)11 29236088, Email: info@inbdna.com.</p><p>9.<strong>SRL Limited</strong></p><p>GP-26, MARUTI INDUSTRIAL ESTATE,</p><p>UDYOG VIHAR,SECTOR-18,</p><p>GURGAON - 122015</p><p>Tel: 0124-3001243 / 0124-3001209</p><p><strong>SRL Limited</strong><br />VASANT VIHAR, 8, PALAM MARG,<br />NEW DELHI - 110057<br />Tel: 011 - 4229 5333&nbsp;</p><p><strong>Website:</strong>&nbsp;<a href="http://www.srlworld.com/" target="_blank">http://www.srlworld.com</a><br /><strong>National Customer care number:</strong><br />Call Toll Free : 1800-222-660/1800-102-8282&nbsp;<br /><strong>E-mail id:</strong>&nbsp;<a href="mailto:customercare@srl.in">customercare@srl.in</a></p><p>10.<strong>Tata Memorial Centre</strong>,</p><p>Advanced Centre for Treatment, Research and Education in Cancer</p><p>Kharghar, Navi Mumbai - 410 210, INDIA.</p><p>Tel: +91-22-2740 5000</p><p>Fax: +91-22-2740 5085</p><p>E-mail: mail@actrec.gov.in</p><p style="text-align: center;">&nbsp;</p><p style="text-align: center;"><span style="font-size: large;"><a href="mailto:office@actrec.gov.in"></a></span></p><p>&nbsp;</p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture</guid>
	<pubDate>Fri, 27 Sep 2013 04:24:45 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/4943/molecular-genetics-lecture</link>
	<title><![CDATA[Molecular Genetics Lecture]]></title>
	<description><![CDATA[<p><span>"Robert Sapolsky makes interdisciplinary connections between behavioral biology and molecular genetic influences. He relates protein synthesis and point mutations to microevolutionary change, and discusses conflicting theories of gradualism and punctuated equilibrium and the influence of epigenetics on development theories."&nbsp;</span></p>
<p><span>"<span><strong>Robert Sapolsky</strong> is an American neuroendocrinologist, professor of biology, neuroscience, and neurosurgery at Stanford University, researcher and author" ----Wikipedia</span></span></p><p>Address of the bookmark: <a href="http://www.youtube.com/watch?v=_dRXA1_e30o" rel="nofollow">http://www.youtube.com/watch?v=_dRXA1_e30o</a></p>]]></description>
	<dc:creator>Rahul Agarwal</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42804/one-year-position-for-a-bioinformatician-computational-biologist-in-population-genetics</guid>
  <pubDate>Fri, 05 Feb 2021 11:19:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[One-year position for a bioinformatician / computational biologist in population genetics]]></title>
  <description><![CDATA[
<p>The successful candidate will work as support staff mainly in the development, application and maintenance of pipelines for handling large omics datasets (including whole-genome sequences, high-density genotypes and mRNA sequences). These pipelines cover pre-processing of data, statistical analyses and genome bioinformatics. The postholder will also provide support in producing high-level graphic representations of<br />these data and of results from their analysis.  Our team is part of UMR<br />7268 ADES research unit (Anthropologie bio-culturelle, Droit, Ethique<br />et Sant=E9), located at the Timone Faculty of Medicine (Aix-Marseille<br />University, 13005 Marseille). </p>

<p>JOB QUALIFICATION<br />- PhD/Engineer/MSc in bioinformatics, biostatistics, genetics/genomics<br />  or any related field.<br />- Advanced knowledge of Bash/Perl scripting and job management on a Unix<br />  HPC and in at least one basic language for data<br />  manipulation/statistics (such as R/Python/Matlab) are required.<br />- Knowledge of at least one programming language (e.g. C), experience<br />  processing -omics data or skills in advanced graphical representation<br />  of data would be a plus.</p>

<p>DURATION<br />1 year, not extensible</p>

<p>SALARY<br />Gross salary is commensurate with experience and grade (MSc from<br />1,882=80/month and PhD/equivalent from 2,099=80/month).</p>

<p>APPLICATIONS/OPENING<br />Please send a motivation letter, a CV and the names of two referees to<br />pierre.faux@univ-amu.fr. The expected starting date is April 1st, 2021;<br />the job offer will however remain opened until the position is filled.</p>

<p>Pierre Faux</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/41222/best-practices-for-variant-calling-with-the-gatk</guid>
	<pubDate>Sat, 22 Feb 2020 03:07:31 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/41222/best-practices-for-variant-calling-with-the-gatk</link>
	<title><![CDATA[Best Practices for Variant Calling with the GATK]]></title>
	<description><![CDATA[<p>The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broad&rsquo;s Genome Analysis Toolkit (GATK) was version 3.3.</p>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<ul>
<li><a href="https://software.broadinstitute.org/gatk/">Genome Analysis Toolkit</a></li>
</ul>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<table>
<tbody style="vertical-align: top;">
<tr>
<td>03/19/15</td>
<td>Introduction to High-Throughput Sequencing data formats and methods</td>
<td>Joel Thibault</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeY3g1M1ZjVjFrZ2s/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6696">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Introduction to the GATK</td>
<td>Geraldine Van der Auwera</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeVEJ1Z1pXUF9Ib3M/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6707">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Mapping, processing, and duplicate marking with Picard tools</td>
<td>Matt Sooknah</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeaGVrbE1GVV9SQkE/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6706">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Mapping and processing RNAseq</td>
<td>Ami Levy-Moonshine</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeLUkwUm5vTGl4bG8/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6705">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Indel realignment</td>
<td>Mark Fleharty</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeLTFzNndsNDBuVms/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6704">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Base quality score recalibration</td>
<td>David Roazen</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeZk1rMXpTYmZzTXc/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6703">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Introduction to variant discovery: calling cohorts</td>
<td>Louis Bergelson</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeQUFYUFRmM1hhRUE/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6702">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Variant calling and joint genotyping</td>
<td>Sheila Chandran</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeYzVTUGs0bjM3M1E/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6701">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Variant quality score recalibration</td>
<td>Bertrand Haas</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeSEpwRkNVQm4wdkE/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6700">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Introduction to working with variants</td>
<td>Yossi Farjoun</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWec0NqUTN2WTRuWWs/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6699">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Genotype refinement</td>
<td>Laura Gauthier</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeMzFldVF5SUp4dWM/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6698">Video</a></td>
</tr>
<tr>
<td>03/19/15</td>
<td>Annotation and variant evaluation</td>
<td>David Benjamin</td>
<td><a href="https://docs.google.com/file/d/0B2dK2q40HDWeWi1YMm42bWdpRE0/preview" target="_blank">PDF</a></td>
<td><a href="https://www.broadinstitute.org/node/6697">Video</a></td>
</tr>
</tbody>
</table><p>Address of the bookmark: <a href="https://www.broadinstitute.org/partnerships/education/broade/best-practices-variant-calling-gatk-1" rel="nofollow">https://www.broadinstitute.org/partnerships/education/broade/best-practices-variant-calling-gatk-1</a></p>]]></description>
	<dc:creator>biogeek</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/5946/bioinformatics-tata-memorial-centre-navi-mumbai</guid>
  <pubDate>Mon, 28 Oct 2013 10:40:25 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics @ TATA MEMORIAL CENTRE, NAVI MUMBAI]]></title>
  <description><![CDATA[
<p>TATA MEMORIAL CENTRE<br />ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER<br />KHARGHAR, NAVI MUMBAI – 410210</p>

<p>No. ACTREC/Advt./ 72 /2013</p>

<p>WALK IN INTERVIEW</p>

<p>1. JRF*<br />Genome-wide RNAi screen with human pooled tyrosine kinase shRNA libraries in head and neck squamous call carcinoma (HNSCC) cell lines<br />DBT A/C No. 3071, Dr. Amit Dutt</p>

<p>2. JRF<br />IRB Project ACTREC Funds<br />Dr. Amit Dutt</p>

<p>3. RA<br />Defining the cancer genome of Head and Neck Squamous Cell Carcinoma (HNSCC) with SNP arrays and next generation sequencing technology<br />A/C No. 2895, Dr. Amit Dutt</p>

<p>Duration of the Project: One year from the date of appointment, or as and when project terminates.</p>

<p>Consolidated Salary: RA : Rs. 40,000/- p.m.<br />JRF* (DBT): Rs. 20,800/- p.m.<br />JRF: Rs. 16,000/- p.m.<br />Date &amp; Time: 6th November, 2013, at 10.00 a.m.</p>

<p>Venue: Conference Room</p>

<p>Minimum Qualifications and Experience:</p>

<p>RA: The ideal applicant should have a PhD in a relevant field. He/she should have a strong computational biology background, with demonstrated experience in coding using Perl, Python, Java or C++. He/she should be familiar with working in unix enviromnent, devising computational algorithms for data analysis, statistical data analysis in R and matlab and database programming using MySQL. Hands on experience in analyzing high throughput data would be an added advantage.</p>

<p>JRF* (DBT project): M.Sc. in Life Sciences or M.Tech in Biotechnology with good academic record (Minimum of 60% aggregate). Valid UGC-CSIR/DBT/ICMR JRF qualification and laboratory experience in molecular biology. Previous experience in molecular biology and animal tissue culture with high throughput platforms and ability to work with a large team would be desirable.</p>

<p>JRF (ACTREC project): M.Sc. in Life Sciences or M.Tech in Biotechnology with good academic record (Minimum of 60% aggregate). Minimum 2 yrs experience in molecular biology and animal tissue culture with high throughput platforms and ability to work with a large team is essential.</p>

<p>*M.Sc. degree obtained after a one year course will not be considered.</p>

<p>Candidates fulfilling above requirements should send their application by e-mail to<br />‘careers.duttlab@gmail.com. in the format given below so as to reach on or before<br />4th November, 2013.</p>

<p>Advertisement:</p>

<p>http://www.actrec.gov.in/data%20files/2013/AD-RA-JR-TECHN-6-NOV.pdf</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44622/variant-calling-resequencing-based-genome-inference</guid>
	<pubDate>Wed, 31 Jul 2024 02:02:24 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44622/variant-calling-resequencing-based-genome-inference</link>
	<title><![CDATA[Variant Calling Resequencing-Based Genome Inference]]></title>
	<description><![CDATA[<p>Variant Calling - Resequencing-Based Genome Inference</p>
<p>Erik Garrison<br>University of Tennessee Health Science Center<br>Workshop on Genomics - Česk&yacute; Krumlov<br>January 12, 2024</p>
<p>https://evomics.org/wp-content/uploads/2024/01/Variant-calling-Workshop-on-Genomics-2024-Cesky-Krumlov.pdf</p><p>Address of the bookmark: <a href="https://evomics.org/wp-content/uploads/2024/01/Variant-calling-Workshop-on-Genomics-2024-Cesky-Krumlov.pdf" rel="nofollow">https://evomics.org/wp-content/uploads/2024/01/Variant-calling-Workshop-on-Genomics-2024-Cesky-Krumlov.pdf</a></p>]]></description>
	<dc:creator>Abhi</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/37536/snippy-rapid-haploid-variant-calling-and-core-snp-phylogeny</guid>
	<pubDate>Sat, 11 Aug 2018 11:06:56 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/37536/snippy-rapid-haploid-variant-calling-and-core-snp-phylogeny</link>
	<title><![CDATA[Snippy: Rapid haploid variant calling and core SNP phylogeny]]></title>
	<description><![CDATA[<p><span>Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree).</span></p>
<pre><code>snippy --cpus 16 --outdir mysnps --ref Listeria.gbk --R1 FDA_R1.fastq.gz --R2 FDA_R2.fastq.gz</code></pre><p>Address of the bookmark: <a href="https://github.com/tseemann/snippy" rel="nofollow">https://github.com/tseemann/snippy</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
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