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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/13267?offset=1210</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/44489/proksee</guid>
	<pubDate>Wed, 27 Mar 2024 11:11:54 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/44489/proksee</link>
	<title><![CDATA[Proksee]]></title>
	<description><![CDATA[<p><span>Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.</span></p>
<fieldset><legend>Please Cite the Following</legend>
<div>Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen C, Graham M, Van Domselaar G, and Stothard P</div>
<div><a href="https://pubmed.ncbi.nlm.nih.gov/37140037/">Proksee: in-depth characterization and visualization of bacterial genomes</a></div>
<div>Nucleic Acids Research, 2023, gkad326, https://doi.org/10.1093/nar/gkad326</div>
</fieldset><p>Address of the bookmark: <a href="https://proksee.ca/" rel="nofollow">https://proksee.ca/</a></p>]]></description>
	<dc:creator>LEGE</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/39025/binc-exam-merged-with-dbt-bet-jrf-exam</guid>
	<pubDate>Thu, 21 Feb 2019 09:37:36 -0600</pubDate>
	<link>https://bioinformaticsonline.com/news/view/39025/binc-exam-merged-with-dbt-bet-jrf-exam</link>
	<title><![CDATA[BINC Exam merged with DBT- BET JRF Exam]]></title>
	<description><![CDATA[<p>Another breaking news received has been received from the Department of biotechnology &ndash; DBT. As per a notification released by DBT, Bioinformatics National Certification (BINC) Exam conducted once per year by DBT has been now merged with DBT- BET JRF Exam.</p><p>Also, Bioinformatics Industrial Training Program (BIITP) is merged with the HRD Biotechnology Industrial Training Programme (BITP).</p><p>While this comes as a surprise for a lot of participants. We believe this is a good attempt to unify and create a national benchmark for talent. And we appreciate this endeavor from Department of biotechnology.</p><p>However, such last-minute announcements can create confusion. Thus candidates are advised to go through the complete notification DBT-BET JRF 2019 via the link below.If you have any kind of doubts, you must contact DBT JRF or Biotecnika for any kind of help &amp; assistance.</p><p><br />Attention:-Bioinformatics Programs (BINC and BIITP)</p><p>1. Bioinformatics National Certification (BINC) has been merged with DBT-Junior<br />Research Fellow (BET Exam)</p><p>2. Bioinformatics Industrial Training Program (BIITP) is merged with HRDBiotechnology Industrial Training Programme (BITP).</p><p>Students of Bioinformatics, who are interested to apply for Fellowship or Industrial<br />Training may keep track of the advertisement of DBT-JRF (BET Exam) and BITP<br />of DBT.</p><p>&nbsp;More at&nbsp;http://www.bcil.nic.in/files/Attention_Bioinformatics_Programs_(BINC_and_BIITP).pdf</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/92/genomic-impact</guid>
	<pubDate>Wed, 10 Jul 2013 01:33:50 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/92/genomic-impact</link>
	<title><![CDATA[Genomic Impact]]></title>
	<description><![CDATA[<p>The ongoing genomic research in USA&nbsp;<span>contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs.&nbsp;</span></p><p><span>Reference:&nbsp;<a href="http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf">http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf</a></span></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/40235/bioinformatics-web-development-course</guid>
	<pubDate>Wed, 06 Nov 2019 20:42:48 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/40235/bioinformatics-web-development-course</link>
	<title><![CDATA[Bioinformatics web development course]]></title>
	<description><![CDATA[<p>This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to develop and deploy web applications for Bioinformatics.</p>
<p>No previous programming knowledge is assumed. By following this tutorial you will learn the fundamental concepts of programming by using scripting languages: variables, types, arrays, cycles, conditional statements, functions, objects, regular expressions, files reading and manipulation et-cetera.</p><p>Address of the bookmark: <a href="http://www.cellbiol.com/bioinformatics_web_development/introduction/" rel="nofollow">http://www.cellbiol.com/bioinformatics_web_development/introduction/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/40945/the-clark-lab</guid>
  <pubDate>Fri, 07 Feb 2020 13:57:24 -0600</pubDate>
  <link></link>
  <title><![CDATA[The Clark Lab]]></title>
  <description><![CDATA[
<p>Study the process of Adaptive Evolution, during which species adopt novel traits to overcome challenges. We retrace the evolutionary histories of genomic elements to determine the changes underlying adaptation and to discover previously unknown genetic networks. These discoveries have already led to advances in human health, species conservation, and molecular biology. </p>

<p>More at http://clark.genetics.utah.edu/</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/858/the-centre-for-bioinformatics-biomarker-discovery-and-information-based-medicine-cibm</guid>
  <pubDate>Sun, 14 Jul 2013 12:31:38 -0500</pubDate>
  <link></link>
  <title><![CDATA[The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM)]]></title>
  <description><![CDATA[
<p>The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM) is committed to shortening the process of obtaining novel discoveries to achieve distinctively better outcomes in clinical practice and translational individualised medicine.</p>

<p>Link @ http://www.newcastle.edu.au/research-and-innovation/centre/cibm/about-us</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42164/postdoctoral-researcher-in-statistical-bioinformatics-at-orebro-university</guid>
  <pubDate>Wed, 26 Aug 2020 10:20:11 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral Researcher in Statistical Bioinformatics at Örebro University]]></title>
  <description><![CDATA[
<p>The position is in Medical Sciences, with special focus on Statistical Bioinformatics.</p>

<p>The position is a full-time position for a fixed term of two years. The salary depends on the successful candidate’s qualifications and experience.</p>

<p>For more information, please contact Prof. Dirk Repsilber,This is an email address, Prof. Hugo Hesser, This is an email addressor Prof. Allan Sirsjö, allan.This is an email address, or Prof. Robert Brummer,This is an email address.</p>

<p>Örebro University actively pursues an equal work environment and values the qualities that diversity adds to our operations.</p>

<p>More detail at https://www.oru.se/english/working-at-orebro-university/jobs-and-vacancies/job/?jid=20200286/</p>
]]></description>
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<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/pages/view/900/bioruby-ruby-packages-for-biologist</guid>
	<pubDate>Mon, 15 Jul 2013 01:36:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/pages/view/900/bioruby-ruby-packages-for-biologist</link>
	<title><![CDATA[BioRuby :Ruby packages for biologist]]></title>
	<description><![CDATA[<p>BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.<br />BioRuby project provides an integrated environment in bioinformatics for the Ruby language. This project is supported by University of Tokyo (Human Genome Center), Kyoto University(Bioinformatics Center) and the Open Bio Foundation. The project was supported by Information-technology Promotion Agency (IPA) as an Exploratory Software Project in 2005<br />RubyForge is a home for open source Ruby projects: RubyForge is a home for open source Ruby projects. BioRuby project was started in late 2000, and is still in progress. Currently, there are over 80 files and 15,000 lines (except comment-only lines) in our source code. This might be equivalent to twice or more lines of other languages because of Ruby's extremely high descriptive power.</p><p>Classes for <br />Multiple alignment (Bio::Alignment), <br />Gene Ontology(Bio::GO), <br />PDB (Bio::PDB), <br />FANTOM database(Bio::FANTOM), <br />GFF (Bio::GFF) and KEGG<br />Orthology (Bio::KEGG::KO).</p><p>They also added support for many applications such as PSORT, SOSUI, TargetP, TMHMM, GenScan, ClustalW, MAFFT, and KEGG API.</p><p>Wiki Links<br />http://bioruby.open-bio.org/wiki/BioRubyOnRails<br />http://dev.bioruby.org/en/</p><p>BioRuby in Anger<br />http://dev.bioruby.org/en/?BioRuby+in+Anger</p><p>BioRuby RDocs<br />http://bioruby.org/rdoc/</p><p>BioRuby Tutorial Website<br />http://dev.bioruby.org/en/?Tutorial.rd</p><p>Why BioRuby Hub for BioRuby<br />http://www.linuxjournal.com/article/5915</p><p>Social Coding Hub for BioRuby<br />http://www.linuxjournal.com/article/5915</p><p>Bioinformatics on Rails: BioRuby Tutorial<br />http://bioinforuby.blogspot.com/2008/02/bioruby-tutorial.html</p><p>RRA BioRuby<br />http://raa.ruby-lang.org/project/bioruby/</p><p>BioRuby Project Discussion Group<br />http://portal.open-bio.org/mailman/listinfo/bioruby</p><p>BioRuby related Projects: Project tree<br />http://rubyforge.org/softwaremap/trove_list.php?form_cat=252</p><p>Reference<br />http://www.jsbi.org/journal/GIW03/GIW03P191.pdf</p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/42206/pollard-lab</guid>
  <pubDate>Fri, 25 Sep 2020 20:20:50 -0500</pubDate>
  <link></link>
  <title><![CDATA[Pollard Lab]]></title>
  <description><![CDATA[
<p>We are a bioinformatics research lab focused on developing novel methods and using them to study genome evolution, organization, and regulation. Our mission is to decode biomedical knowledge that is missed without rigorous statistical approaches.</p>

<p>http://docpollard.org/</p>

<p>Tools</p>

<p>http://docpollard.org/resources/software/</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/871/postdoctoral-position-in-bioinformatics-sweden</guid>
  <pubDate>Sun, 14 Jul 2013 13:49:57 -0500</pubDate>
  <link></link>
  <title><![CDATA[Postdoctoral position in bioinformatics @ Sweden]]></title>
  <description><![CDATA[
<p>Information about the department<br />The Department of Mathematical Sciences at Chalmers University of Technology and the University of Gothenburg has about 170 faculty and staff and is the largest department of mathematical sciences in the Nordic countries. The department belongs to both Chalmers University of Technology and the University of Gothenburg (for more information see http://www.chalmers.se/math/).</p>

<p>Job description<br />We are looking for a motivated, self-driven post-doctoral researcher to work with large-scale sequence data analysis. The position is for 24 months and located at Mathematical Statistics, Department of Mathematical Sciences in Erik Kristiansson’s research group. We are focused on methods development for and analysis of next generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have strong interdisciplinary profile and are actively collaborating with several experimental groups, especially within the environmental sciences, ecology, infectious diseases and cancer genomics. More information is available at http://bioinformatics.math.chalmers.se.</p>

<p>The Post-doctoral position is an appointment that offers an opportunity to qualify for further research positions within academia or industry. The majority of your working time is devoted to your own research, normally as a member of a research group. Included in your work is also to take part in supervision of Ph.D. students and M.Sc thesis students. Teaching of undergraduate students may also be included to a small extent.</p>

<p>The employment is limited to a maximum of 2 years (1+1).</p>

<p>Qualifications<br />The applicant should have Ph.D. degree preferably in bioinformatics, mathematics, statistics, computer science or equivalent by the start of the appointment. Experience from analysis of large-scale data, in particular from next generation DNA sequencing, is highly valued. The applicant should also be proficient in programming (e.g. Python/Java/C) and comfortable with Unix/Linux systems. Interaction with experimental biologists is central and good collaborative skills are therefore important. Fluency in written and spoken English is a strong requirement. As a post-doctoral researcher you are expected to work independently and to be able to supervise/co-supervise PhD and Master’s students.</p>

<p>Application procedure<br />The application should be marked with Ref 20130126 and written in English. The application should be sent electronically via Chalmers webpage.</p>

<p>Application deadline: September 8, 2013.</p>

<p>For questions, please contact: <br />Ass prof. Erik Kristiansson, Matematiska Vetenskaper, erik.kristiansson@chalmers.se, +46 31-772 3521, +46 70-5259751.</p>

<p>Chalmers continuously strive to be an attractive employer. Equality and diversity are substantial foundations in all activities at Chalmers.</p>
]]></description>
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