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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/13842?offset=500</link>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25409/jrf-bioinformatics-at-cuk</guid>
  <pubDate>Thu, 03 Dec 2015 23:40:38 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics at CUK]]></title>
  <description><![CDATA[
<p>JRF Bioinformatics</p>

<p>Eligibility : MSc(Bio-Informatics), BE/B.Tech</p>

<p>Location : Kasaragod</p>

<p>Last Date : 20 Dec 2015</p>

<p>Hiring Process : Face to Face Interview<br />Central University of Kerala</p>

<p>JRF job opportunity in Central University of Kerala (CUK) on temporary basis </p>

<p>Project Title : "Targeting TAL effector mediated susceptibility for durable and broad-spectrum resistance to bacterial blight in Rice"</p>

<p>No. of Post : 01</p>

<p>Qualification : MSc in any subject under Life Science or Bioinformatics/ B.Tech in Bioinformatics + 1 yr experience </p>

<p>Stipend : Rs. 14,000/-<br />How to apply</p>

<p>Interested candidates are requested to send their applications explaining their interest in the position with an updated CV to Dr. Ginny Antony, Assistant Professor, Department of Plant Science, School of Biological Sciences, Central University of Kerala, Padannakkad, Kasaragod, Kerala - 671 314 email: ginnycuk2013@gmail.com on or before 20th December, 2015.</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25651/jrftraineeshipstudentship-bioinformatics</guid>
  <pubDate>Thu, 10 Dec 2015 13:49:56 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF/Traineeship/Studentship Bioinformatics]]></title>
  <description><![CDATA[
<p>JRF/Traineeship/Studentship Bioinformatics</p>

<p>Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg, CSE), MSc(Bio-Informatics, CS)</p>

<p>Location : Delhi</p>

<p>Last Date : 18 Dec 2015</p>

<p>Hiring Process : Walk - In<br />IARI - Job Details</p>

<p>JRF/Traineeship/Studentship Bioinformatics job position in Indian Agricultural Research Institute (IARI) purely temporary</p>

<p>JRF</p>

<p>Qualification: i) Master’s degree in Bioinformatics or Computer Science + NET qualification, or ii) M. Tech degree in Bioinformatics or Computer Science/Engineering</p>

<p>Desirable: Efficiency to handle agricultural databases and bioinformatics tool development</p>

<p>Pay Scale :Rs 25000/- </p>

<p>Age limit : 35 years</p>

<p>Traineeship/2 Post</p>

<p>Qualification: M.Sc./M. Tech (Bioinformatics) with 60 % marks from a recognized University </p>

<p>Pay Scale :Rs. 8000/-consolidated</p>

<p>Age limit : 35 years</p>

<p>Studentship/4 Post</p>

<p>Qualification: Final year M.Sc./ M.Tech (Bioinformatics) Students from a recognized University</p>

<p>Pay Scale :Rs. 8000/-consolidated</p>

<p>Age limit : 35 years<br />How to apply</p>

<p>Walk-in-Interview will be held on 18th December 2015 at 10:00 AM at AKMU, LBS Building,IARI, Pusa Campus, New Delhi-110012. Bring self attested copies and originals of all certificates ( class 10th )onwards along with biodata in the attached format, proof of date of birth, one passport size photo, NOC from present employer, if any.</p>

<p>More at http://www.iari.res.in/index.php?option=com_jumi&amp;fileid=24&amp;Itemid=664</p>
]]></description>
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<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/25815/jrf-bioinformatics-job-position-in-university-of-hyderabad</guid>
  <pubDate>Tue, 29 Dec 2015 01:00:18 -0600</pubDate>
  <link></link>
  <title><![CDATA[JRF Bioinformatics job position in University of Hyderabad]]></title>
  <description><![CDATA[
<p>JRF Bioinformatics</p>

<p>Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics)</p>

<p>Location : Hyderabad</p>

<p>Last Date : 30 Dec 2015</p>

<p>Hiring Process : Written-test<br />University of Hyderabad</p>

<p>JRF Bioinformatics job position in University of Hyderabad </p>

<p>Project Entitled : Programming protective humoral responses with novel vaccine formulations against Dengue Virus</p>

<p>Essential Qualifications : M. Sc. in Life Sciences/Bioinformatics/ or M. Tech in Bioinformatics with a minimum of 60% marks and with CSIR-UGC JRF/NET or valid GATE score are preferred. Desirable : Candidates should have six months to one year hands on experience in molecular biology techniques like gene cloning, protein expression and purification, hands on various nano-formulations for drug/vaccine delivery, immunological assays including animal handling, immunizations, T cells and B cell assays or Candidate should have strong background in Bioinformatics and computational Biology, good programming skill particularly proficiency in R/PERL/PYTHON. Candidates interested in above position should send a one page statement clearly explaining how their skills are relevant to the above said position. The candidates should also enclose detailed CV and the name/Email IDs of three references</p>

<p>Fellowship : Rs. 16,000 p.m. + 30% H.R.A. for the first two years (Revised DBT fellowship guidelines maybe applicable)</p>

<p>Duration : The appointment will be on temporary basis for a period of one year. Based on performance, the appointment could be extended till the end of project<br /> <br />How to apply</p>

<p>Submit your application (hardcopy) in a closed envelope to Dr.Nooruddin<br />Khan, Room S-66B,Department of Biotechnology and Bioinfromatics, School of Life Sciences, University of Hyderabad, Gachibowli, Hyderabad 500 046 or E mail: nklabsls@gmail.com. Last date for receipt of applications is on or before 30.12.2015</p>

<p>More at http://uohyd.ac.in/index.php/component/content/article/87-administration/recruitments/129</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26325/crossmap</guid>
	<pubDate>Mon, 08 Feb 2016 15:47:00 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26325/crossmap</link>
	<title><![CDATA[CrossMap]]></title>
	<description><![CDATA[<p>CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between <em>different assemblies</em> (such as Human <a href="http://www.ncbi.nlm.nih.gov/assembly/2928/">hg18 (NCBI36)</a> &lt;&gt; <a href="http://www.ncbi.nlm.nih.gov/assembly/2758/">hg19 (GRCh37)</a>, Mouse <a href="http://www.ncbi.nlm.nih.gov/assembly/165668/">mm9 (MGSCv37)</a> &lt;&gt; <a href="http://www.ncbi.nlm.nih.gov/assembly/327618/">mm10 (GRCm38)</a>).</p>
<p>It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.</p>
<p>CrossMap is designed to liftover genome coordinates between assemblies. It&rsquo;s <em>not</em> a program for aligning sequences to reference genome.</p>
<p>We <em>do not</em> recommend using CrossMap to convert genome coordinates between species.</p>
<p>More at http://crossmap.sourceforge.net/</p><p>Address of the bookmark: <a href="http://crossmap.sourceforge.net/" rel="nofollow">http://crossmap.sourceforge.net/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26409/ucsc-genome-browser-and-blat-software</guid>
	<pubDate>Thu, 18 Feb 2016 03:18:57 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26409/ucsc-genome-browser-and-blat-software</link>
	<title><![CDATA[UCSC Genome Browser and Blat software !]]></title>
	<description><![CDATA[<p>This directory contains Genome Browser and Blat application binaries built for standalone <br>command-line use on various supported Linux and UNIX platforms. To determine which set of binaries <br>to download, type "uname -a" on the command line to display your machine type. In most cases the <br>usage statement for the application can be viewed by running the binary with no arguments. <br><br>The UCSC Genome Browser and Blat software are free for academic, nonprofit, and personal use. A <br>license is required for commercial download and installation of these binaries, with the exception <br>of items built from the following source code directories, which are freely available for all uses:<br><br>&nbsp;- kent/src/utils (includes big* tools)<br>&nbsp;- kent/src/lib<br>&nbsp;- kent/src/hg/autoSql<br>&nbsp;- kent/src/hg/autoXml<br><br>For information about commercial licensing of the Genome Browser software, see <br>http://genome.ucsc.edu/license/. The Blat and In-Silico PCR software may be commercially<br>licensed through Kent Informatics (http://www.kentinformatics.com).</p>
<p>More at http://hgdownload.cse.ucsc.edu/admin/exe/</p><p>Address of the bookmark: <a href="http://hgdownload.cse.ucsc.edu/admin/exe/" rel="nofollow">http://hgdownload.cse.ucsc.edu/admin/exe/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/26432/summer-2016</guid>
  <pubDate>Sun, 21 Feb 2016 06:17:55 -0600</pubDate>
  <link></link>
  <title><![CDATA[Summer 2016]]></title>
  <description><![CDATA[
<p>REU at Fordham University- Summer 2016</p>

<p>An NSF-funded REU to study Y-chromosome diversity and sex-biased dispersal in wild brown rats (Rattus norvegicus) is available in the Munshi-South Lab at Fordham University. Our lab is currently investigating rat evolution at scales ranging from landscape genetics of individual cities to global patterns of diversity. Development of resources for investigating Y-chromosome diversity will support many of these studies. The REU student will work with the lab to bioinformatically identify Y-chromosome SNPs, design SNPtype assays,<br />extract DNA, genotype samples, and analyze data.</p>

<p>We seek applicants interested in bioinformatics, evolutionary biology, and related disciplines.  Applicants must have taken a college-level genetics course.  This REU will require attention to detail, reliability, independence, and critical thinking.</p>

<p>This position is based at Fordham University's field station, the Louis Calder Center, in Armonk, NY. The Calder Center is located approximately 25 miles north of New York City in a protected woodland area. Housing<br />will be provided at the Calder Center for the duration of the REU (May 23 to Aug 12, 2016). Additionally, the student will receive a $6,000 stipend. The selected student will participate in professional development activities through the Calder Centers REU program, including presentation of results at a research colloquium at the end of the summer.</p>

<p>To apply, please send a one page personal statement about your scientific interests and how this REU will support your professional goals, unofficial transcripts including a list of Spring 2016 courses, and names of two professional references (including title, address, phone number, and email address) as a single pdf (with your last name in the file name) to Dr. Jason Munshi-South (jmunshisouth@fordham.edu).</p>

<p>Applications are due March 4th, 2016.</p>

<p>Jason Munshi-South</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26543/breakseq2</guid>
	<pubDate>Mon, 29 Feb 2016 17:45:38 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26543/breakseq2</link>
	<title><![CDATA[BreakSeq2]]></title>
	<description><![CDATA[<p>Ultrafast and accurate nucleotide-resolution analysis of structural variants</p>
<p>More at http://bioinform.github.io/breakseq2/</p>
<p>Download BreakSeq2</p>
<p>Latest version: https://github.com/bioinform/breakseq2/archive/2.2.tar.gz<br><br>For other versions, see "releases". https://github.com/bioinform/breakseq2/releases</p><p>Address of the bookmark: <a href="http://bioinform.github.io/breakseq2/" rel="nofollow">http://bioinform.github.io/breakseq2/</a></p>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</guid>
	<pubDate>Mon, 07 Mar 2016 05:18:06 -0600</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26573/efficient-genome-searching-with-biostrings-and-the-bsgenome-data-package</link>
	<title><![CDATA[Efficient genome searching with Biostrings and the BSgenome data package]]></title>
	<description><![CDATA[<p>Address of the bookmark: <a href="https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf" rel="nofollow">https://www.bioconductor.org/packages/3.3/bioc/vignettes/BSgenome/inst/doc/GenomeSearching.pdf</a></p>]]></description>
	<dc:creator>Aasha</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27555/phd-at-institute-of-life-sciences-bhubaneswar</guid>
  <pubDate>Mon, 30 May 2016 03:36:04 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD at INSTITUTE OF LIFE SCIENCES, Bhubaneswar]]></title>
  <description><![CDATA[
<p>INSTITUTE OF LIFE SCIENCES</p>

<p>Bhubaneswar 751023</p>

<p>Advt No. 07/2016</p>

<p>Institute of Life Sciences (ILS), Bhubaneswar, an autonomous Institute of the Department of Biotechnology, Ministry of Science &amp; Technology, Government of India engaged in advanced research invites applications from Indian nationals for the Ph.D. program. The main focus of the projects will be computational biology in the following areas.</p>

<p>S. No. Area of Research Principal investigator</p>

<p>1. Computational Cancer Biology Dr. Anshuman Dixit</p>

<p>2. Immunogenomics &amp; Systems Biology Dr. Sunil Kumar Raghav</p>

<p>3. Chromatin remodeling and hematopoiesis Dr. Punit Prasad</p>

<p>Candidates are strongly encouraged to visit ILS webpage for detailed information, regarding the research activities of the above mentioned scientists.</p>

<p>Essential Qualifications:</p>

<p>(a) Eligibility: M.Sc., M.V.Sc., M.Pharm., M.S. Pharma. (with NET/GATE/GPAT/BINC/any other equivalent national level exam) or M.Tech with minimum of 60% marks (or equivalent grade point). Those awaiting final result may also apply.</p>

<p>Applications received after the last date will not be accepted. The envelope should clearly be superscribed with “Application for Ph.D. program (computational biology)”. Short-listed candidates selected for the interview will be published in the Institute website (www.ils.res.in).</p>

<p>Application Fees: Applicants except SC/ST candidates are required to send a non-refundable D.D. for Rs.100/- in favour of “Director, Institute of Life Sciences, Bhubaneswar” payable at Bhubaneswar along with duly filled-in application form by the date mentioned below. Director, ILS reserves the right to withdraw the procedure without assigning any reasons thereof.</p>

<p>Important dates: </p>

<p>Last date of receiving applications: 24th June 2016 </p>

<p>Date of display of short-listed candidates and instructions on the Institute website: 30th June 2016 </p>

<p>Date of interview: The interview will be organized on 25th July 2016</p>

<p>Advertisement: https://www.ils.res.in/wp-content/uploads/2016/05/advt07-16.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26852/awesome-bioinformatics-pipelines</guid>
	<pubDate>Wed, 30 Mar 2016 21:50:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26852/awesome-bioinformatics-pipelines</link>
	<title><![CDATA[Awesome bioinformatics pipelines !]]></title>
	<description><![CDATA[<p><span>A curated list of awesome pipeline toolkits ...</span></p>
<p><span>https://github.com/pditommaso/awesome-pipeline</span></p><p>Address of the bookmark: <a href="https://github.com/pditommaso/awesome-pipeline" rel="nofollow">https://github.com/pditommaso/awesome-pipeline</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
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