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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/14036?offset=30</link>
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	<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/5934/retrovirus-replication-3d-animation</guid>
	<pubDate>Sat, 26 Oct 2013 09:07:25 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/5934/retrovirus-replication-3d-animation</link>
	<title><![CDATA[Retrovirus Replication 3D Animation]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/HhhRQ4t95OI" frameborder="0" allowfullscreen></iframe>The example used is the HIV Lentivirus. This video does a great job describing "complex" retrovirus transcription in a visually appealing way that is sufficient in detail for upper level coursework and possibly graduate coursework.
 * Modes of action for some anti-viral drugs are also described.

NOTE:  The viral genome in the form of DNA stays in the cell's chromosome! This is the predominant reason for the persistence of retroviral infections.]]></description>
	
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/13878/janet-iwasa-how-animations-can-help-scientists-test-a-hypothesis</guid>
	<pubDate>Sun, 10 Aug 2014 15:26:04 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/13878/janet-iwasa-how-animations-can-help-scientists-test-a-hypothesis</link>
	<title><![CDATA[Janet Iwasa: How animations can help scientists test a hypothesis]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/YvyeI-Axb70" frameborder="0" allowfullscreen></iframe>3D animation can bring scientific hypotheses to life. Molecular biologist (and TED Fellow) Janet Iwasa introduces a new open-source animation software designed just for scientists.

TEDTalks is a daily video podcast of the best talks and performances from the TED Conference, where the world's leading thinkers and doers give the talk of their lives in 18 minutes (or less). Look for talks on Technology, Entertainment and Design -- plus science, business, global issues, the arts and much more.
Find closed captions and translated subtitles in many languages at http://www.ted.com/translate

Follow TED news on Twitter: http://www.twitter.com/tednews
Like TED on Facebook: https://www.facebook.com/TED

Subscribe to our channel: http://www.youtube.com/user/TEDtalksDirector]]></description>
	
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/2383/golden-rules-of-bioinformatics</guid>
	<pubDate>Wed, 14 Aug 2013 21:11:33 -0500</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/2383/golden-rules-of-bioinformatics</link>
	<title><![CDATA[Golden Rules of Bioinformatics]]></title>
	<description><![CDATA[<ol>
<li>All constant are variable.</li>
<li>Copy and paste is a genetic error.</li>
<li>First solve the problem, then write the code.</li>
<li>No matter what goes wrong, it will probably look right.</li>
<li>Any simple problem can be insoluble if enough metting are held to discuss it. :P</li>
<li>Stastics is a systematic method of comming to the wrong conclusion with confidence.</li>
<li>Bug is a undocumented feature in programming languages.</li>
<li>Good biological programmer goes on summer holiday with raincoat. [because see 1]</li>
<li>Thanks god Google know python is not a python and multiplication and division are the same thing.</li>
<li>Don' be clever, complex biology will trick you.</li>
</ol>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/4194/what-a-bioinformatician-always-dream-for</guid>
	<pubDate>Tue, 03 Sep 2013 15:31:17 -0500</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/4194/what-a-bioinformatician-always-dream-for</link>
	<title><![CDATA[What a bioinformatician always dream for ???]]></title>
	<description><![CDATA[<ol style="color: #000000; background-color: #ffffff;">
<li>Well established bioinformatics labs with SGI(silicon graphics interface)</li>
<li>License of all commercial softwares.</li>
<li>Complete, and&nbsp;fully assembled genome of the girl :P</li>
<li>A girl/boy with lesser E-values and higher compatibility score.</li>
<li>Horoscope Match should be significant (not less that 18).</li>
<li>Laptops with broadband connections.</li>
<li>Licence to almost all genomics and proteomics servers.</li>
<li>All eBooks of bioinformatics.</li>
<li>Ready passport and Study visa.</li>
</ol>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/5964/alien-spy</guid>
	<pubDate>Wed, 30 Oct 2013 19:12:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/5964/alien-spy</link>
	<title><![CDATA[Alien Spy !!!]]></title>
	<description><![CDATA[<p>Alien spy are looking for human genome sequences ..&nbsp;</p>]]></description>
	<dc:creator>Jit</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/5964" length="15626" type="image/jpeg" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/8509/the-best-bioinformatics-computational-biology-quotes</guid>
	<pubDate>Wed, 26 Feb 2014 17:50:59 -0600</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/8509/the-best-bioinformatics-computational-biology-quotes</link>
	<title><![CDATA[The Best Bioinformatics / Computational Biology Quotes]]></title>
	<description><![CDATA[<p><img src="http://bioinformaticsonline.com/mod//photo/hahaha.png" style="border: 0; border: 0px;" alt="image"></p><p>Bioinformatician are not anti-social; We are just genome friendly.</p><p>Bioinformatician would love to change the biological world, but they won't give us the genetic code :P</p><p>If at first you don't succeed; call it version 1.0</p><p>The glass is neither half-full nor half-empty: it's actually have several genomes.</p><p>I'm BioGeek.</p><p>Fedup with LIPS, try God script.</p><p>Idiot, Go ahead, make my data!</p><p>Thank god, my genome just compiled.</p><p>Error message: "Out of space on genome drive:"</p><p>Shut up mobile elements, or i'll flush you out.</p><p>Never underestimate the internet bandwidth, u gotta incomplete.</p><p>Applied fuzzy logic to understand God's logic?</p><p>Warning! Overflow, delete chromosome !</p><p>Be nice to the BioGeek, for all you know they might be the next curator!</p><p>Beware of computational biologist they screw genes and protein.</p><p>Warning! Your genome is full of garbage, delete it !</p><p>Bad or missing mouse genome. Spank the cat? (Y/N)</p><p>Genome make very fast, very accurate mistakes.</p><p>Let's BLAST it.</p><p>Some genome never has transposons. It just develops random features.</p><p>Go watch CINEMA and have BLAST.</p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/14221/bioinformatician-at-work</guid>
	<pubDate>Wed, 20 Aug 2014 22:20:10 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/14221/bioinformatician-at-work</link>
	<title><![CDATA[Bioinformatician at work !!!]]></title>
	<description><![CDATA[<p>The busy life of a bioinformatician. Need many more hands to deal with additional job :)</p>]]></description>
	<dc:creator>Neel</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/14221" length="1439785" type="image/png" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/19732/marine-bioinformatician</guid>
	<pubDate>Wed, 24 Dec 2014 05:17:27 -0600</pubDate>
	<link>https://bioinformaticsonline.com/file/view/19732/marine-bioinformatician</link>
	<title><![CDATA[Marine bioinformatician ;)]]></title>
	<description><![CDATA[<p>A marine bioinformatician at work. Sorry&nbsp;jealous biotechnologist, this is how we work.</p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/19732" length="35550" type="image/gif" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/file/view/45169/life-of-a-bioinformatician</guid>
	<pubDate>Fri, 15 May 2026 02:30:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/file/view/45169/life-of-a-bioinformatician</link>
	<title><![CDATA[Life of a Bioinformatician !]]></title>
	<description><![CDATA[<div><div><div><div><div><div><div dir="auto"><div><div><p>Somewhere between FASTQ files, volcano plots, and 3 AM coffee&hellip; the gene is probably hiding too.</p><p>#Bioinformatics #Genomics #ResearchL</p></div></div></div></div></div></div></div></div></div>]]></description>
	<dc:creator>Jitendra Narayan</dc:creator>
	<enclosure url="https://bioinformaticsonline.com/file/download/45169" length="2686336" type="image/png" />
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/32129/lordec-a-hybrid-error-correction-program-for-long-pacbio-reads</guid>
	<pubDate>Mon, 10 Apr 2017 04:16:09 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/32129/lordec-a-hybrid-error-correction-program-for-long-pacbio-reads</link>
	<title><![CDATA[LoRDEC: a hybrid error correction program for long, PacBio reads]]></title>
	<description><![CDATA[<p>LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and the PacBio read set, which is then corrected using the reference set. Typically, the reference set contains Illumina reads.</p>
<p><br> Usually, errors in PacBio reads include many insertions and deletions, and comparatively less substitutions. LoRDEC can correct errors of all these types.<br> After correction, a larger portion of the sequence of PacBio reads is usable for detection of region of similarity with other sequences, for aligning them to the contigs of an assembly, etc.</p>
<p>Why is LoRDEC different?</p>
<ul>
<li>It is efficient and can process large read data sets, included from eukaryotic or vertebrate species, on a usual computing server, and even works on desktop/laptop computers.</li>
<li>It adopts a novel graph based approach: it builds a succinct De Bruijn Graph (DBG) representing the short reads, and seeks a corrective sequence for each erroneous region of a long read by traversing chosen paths in the graph.</li>
</ul><p>Address of the bookmark: <a href="http://www.atgc-montpellier.fr/lordec/" rel="nofollow">http://www.atgc-montpellier.fr/lordec/</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
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