<?xml version='1.0'?><rss version="2.0" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:georss="http://www.georss.org/georss" xmlns:atom="http://www.w3.org/2005/Atom" >
<channel>
	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/14215?offset=860</link>
	<atom:link href="https://bioinformaticsonline.com/related/14215?offset=860" rel="self" type="application/rss+xml" />
	<description><![CDATA[]]></description>
	
	
<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27555/phd-at-institute-of-life-sciences-bhubaneswar</guid>
  <pubDate>Mon, 30 May 2016 03:36:04 -0500</pubDate>
  <link></link>
  <title><![CDATA[PhD at INSTITUTE OF LIFE SCIENCES, Bhubaneswar]]></title>
  <description><![CDATA[
<p>INSTITUTE OF LIFE SCIENCES</p>

<p>Bhubaneswar 751023</p>

<p>Advt No. 07/2016</p>

<p>Institute of Life Sciences (ILS), Bhubaneswar, an autonomous Institute of the Department of Biotechnology, Ministry of Science &amp; Technology, Government of India engaged in advanced research invites applications from Indian nationals for the Ph.D. program. The main focus of the projects will be computational biology in the following areas.</p>

<p>S. No. Area of Research Principal investigator</p>

<p>1. Computational Cancer Biology Dr. Anshuman Dixit</p>

<p>2. Immunogenomics &amp; Systems Biology Dr. Sunil Kumar Raghav</p>

<p>3. Chromatin remodeling and hematopoiesis Dr. Punit Prasad</p>

<p>Candidates are strongly encouraged to visit ILS webpage for detailed information, regarding the research activities of the above mentioned scientists.</p>

<p>Essential Qualifications:</p>

<p>(a) Eligibility: M.Sc., M.V.Sc., M.Pharm., M.S. Pharma. (with NET/GATE/GPAT/BINC/any other equivalent national level exam) or M.Tech with minimum of 60% marks (or equivalent grade point). Those awaiting final result may also apply.</p>

<p>Applications received after the last date will not be accepted. The envelope should clearly be superscribed with “Application for Ph.D. program (computational biology)”. Short-listed candidates selected for the interview will be published in the Institute website (www.ils.res.in).</p>

<p>Application Fees: Applicants except SC/ST candidates are required to send a non-refundable D.D. for Rs.100/- in favour of “Director, Institute of Life Sciences, Bhubaneswar” payable at Bhubaneswar along with duly filled-in application form by the date mentioned below. Director, ILS reserves the right to withdraw the procedure without assigning any reasons thereof.</p>

<p>Important dates: </p>

<p>Last date of receiving applications: 24th June 2016 </p>

<p>Date of display of short-listed candidates and instructions on the Institute website: 30th June 2016 </p>

<p>Date of interview: The interview will be organized on 25th July 2016</p>

<p>Advertisement: https://www.ils.res.in/wp-content/uploads/2016/05/advt07-16.pdf</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26852/awesome-bioinformatics-pipelines</guid>
	<pubDate>Wed, 30 Mar 2016 21:50:41 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26852/awesome-bioinformatics-pipelines</link>
	<title><![CDATA[Awesome bioinformatics pipelines !]]></title>
	<description><![CDATA[<p><span>A curated list of awesome pipeline toolkits ...</span></p>
<p><span>https://github.com/pditommaso/awesome-pipeline</span></p><p>Address of the bookmark: <a href="https://github.com/pditommaso/awesome-pipeline" rel="nofollow">https://github.com/pditommaso/awesome-pipeline</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26906/paired-end-assembler-for-dna-sequences</guid>
	<pubDate>Wed, 06 Apr 2016 05:25:34 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26906/paired-end-assembler-for-dna-sequences</link>
	<title><![CDATA[PAired-eND Assembler for DNA sequences]]></title>
	<description><![CDATA[<p>PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.</p>
<p>&nbsp;</p>
<p>More at https://github.com/neufeld/pandaseq</p><p>Address of the bookmark: <a href="https://github.com/neufeld/pandaseq" rel="nofollow">https://github.com/neufeld/pandaseq</a></p>]]></description>
	<dc:creator>Neel</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26919/pear-a-fast-and-accurate-illumina-paired-end-read-merger</guid>
	<pubDate>Wed, 06 Apr 2016 13:27:23 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26919/pear-a-fast-and-accurate-illumina-paired-end-read-merger</link>
	<title><![CDATA[PEAR: a fast and accurate Illumina Paired-End reAd mergeR]]></title>
	<description><![CDATA[<p><strong>PEAR</strong>&nbsp;is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory.</p>
<p>PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it implements a statistical test for minimizing false-positive results. Together with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on a standard desktop computer.</p>
<p>More at&nbsp;http://www.exelixis-lab.org/web/software/pear</p>
<p>Paper:&nbsp;http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933873/</p><p>Address of the bookmark: <a href="http://www.exelixis-lab.org/web/software/pear" rel="nofollow">http://www.exelixis-lab.org/web/software/pear</a></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/26968/scalce</guid>
	<pubDate>Fri, 15 Apr 2016 05:09:51 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/26968/scalce</link>
	<title><![CDATA[SCALCE]]></title>
	<description><![CDATA[<p><span>SCALCE (</span><code>/skeɪlz/</code><span>, a.k.a. boosting&nbsp;</span><span style="text-decoration: underline;">S</span><span>equence&nbsp;</span><span style="text-decoration: underline;">C</span><span>ompression&nbsp;</span><span style="text-decoration: underline;">A</span><span>lgorithms using&nbsp;</span><span style="text-decoration: underline;">L</span><span>ocally&nbsp;</span><span style="text-decoration: underline;">C</span><span>onsistent</span><span style="text-decoration: underline;">E</span><span>ncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ with consistent read lengths.&nbsp;</span></p>
<p><span>More at&nbsp;http://sfu-compbio.github.io/scalce/</span></p><p>Address of the bookmark: <a href="http://sfu-compbio.github.io/scalce/" rel="nofollow">http://sfu-compbio.github.io/scalce/</a></p>]]></description>
	<dc:creator>Surabhi Chaudhary</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27035/spades</guid>
	<pubDate>Tue, 19 Apr 2016 08:37:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27035/spades</link>
	<title><![CDATA[SPAdes]]></title>
	<description><![CDATA[<p>SPAdes &ndash; St. Petersburg genome assembler &ndash; is intended for both standard isolates and single-cell MDA bacteria assemblies. This manual will help you to install and run SPAdes. SPAdes version 3.7.1 was released under GPLv2 on March 8, 2016 and can be downloaded from <a href="http://bioinf.spbau.ru/en/spades" target="_blank">http://bioinf.spbau.ru/en/spades</a>.</p>
<p>Manual at http://spades.bioinf.spbau.ru/release3.7.1/manual.html</p><p>Address of the bookmark: <a href="http://bioinf.spbau.ru/spades" rel="nofollow">http://bioinf.spbau.ru/spades</a></p>]]></description>
	<dc:creator>Abhimanyu Singh</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/bookmarks/view/27070/venn-diagrams-on-r-studio</guid>
	<pubDate>Mon, 25 Apr 2016 16:22:28 -0500</pubDate>
	<link>https://bioinformaticsonline.com/bookmarks/view/27070/venn-diagrams-on-r-studio</link>
	<title><![CDATA[Venn Diagrams on R Studio]]></title>
	<description><![CDATA[<h3>First step: Install &amp; load &ldquo;VennDiagram&rdquo; package.</h3>
<pre><code><span># install.packages('VennDiagram')</span>
<span>library</span><span>(</span><span>VennDiagram</span><span>)</span>
</code></pre>
<h3>Second step: Load data</h3>
<p>Add filepath if &ldquo;catdoge.csv&rdquo; is not in working-directory.</p>
<pre><code><span>d</span> <span>&lt;-</span> <span>read.csv</span><span>(</span><span>"catdoge.csv"</span><span>)</span></code><br><br></pre><p>Address of the bookmark: <a href="http://rstudio-pubs-static.s3.amazonaws.com/13301_6641d73cfac741a59c0a851feb99e98b.html" rel="nofollow">http://rstudio-pubs-static.s3.amazonaws.com/13301_6641d73cfac741a59c0a851feb99e98b.html</a></p>]]></description>
	<dc:creator>Jitendra Prajapati</dc:creator>
</item>

<item>
  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/27098/bioinformatics-faculty-at-tnu</guid>
  <pubDate>Wed, 27 Apr 2016 10:07:15 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatics Faculty at TNU]]></title>
  <description><![CDATA[
<p>TNU is hiring faculty as Professors, Associate Professors and Assistant Professors in the following research and teaching programs.</p>

<p>Basic Sciences</p>

<p>Biotechnology &amp; Bioinformatics</p>

<p>Qualifications are as per UGC norms. Please visit www.ugc.ac.in.</p>

<p>Educational, Age and experience requirements will be relaxed in exceptional cases.</p>

<p>Interested candidates are requested to apply with their complete CV with list of Publications, Patents, Industry and teaching experience at Undergraduate and Postgraduate level along with other relevant information to hr@tnu.in </p>

<p>Provide names and contact details of at least two references for confidential evaluation. </p>

<p>We follow Central University pay scales and few additional perks.     </p>

<p>TNU follows highly liberal HR Policy with no salary constraint for exceptional candidates.</p>

<p>Applications are invited for the positions of - Professor, Associate Professor &amp; Assistant Professor.<br />https://drive.google.com/file/d/0B0Y1Fpxmzyd3OHQ3aUNYa3hZY2c/view?usp=sharing</p>

<p>Reference<br />- Times of India, Ascent as on 20.04.2016.</p>
]]></description>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/news/view/27235/supposedly-educational-r</guid>
	<pubDate>Tue, 03 May 2016 16:43:08 -0500</pubDate>
	<link>https://bioinformaticsonline.com/news/view/27235/supposedly-educational-r</link>
	<title><![CDATA[Supposedly Educational R]]></title>
	<description><![CDATA[<p>R 3.3.0 (codename &ldquo;Supposedly Educational&rdquo;)&nbsp;was <a href="http://r.789695.n4.nabble.com/R-3-3-0-is-released-td4720368.html" target="_blank">released today</a>.&nbsp;You can get the latest binaries version <strong><a href="http://cran.rstudio.com/" target="_blank">from here</a>.</strong>&nbsp;(or the .tar.gz&nbsp;<strong>source</strong> code from <a href="http://cran.r-project.org/src/base/R-3/R-3.3.0.tar.gz" target="_blank">here</a>).&nbsp;The full list of new features and bug fixes is provided below.</p><p>If you are using <strong>Windows&nbsp;</strong>you can easily upgrade to the latest version of R using <a href="http://cran.r-project.org/web/packages/installr/" target="_blank">the installr package</a>. Simply run the following code in Rgui:</p><div><table width="710">
<tbody>
<tr id="p613882">
<td id="p61388code2">
<pre><span style="color: #0000ff; font-weight: bold;">install.<span>packages</span></span><span style="color: #080;">(</span><span style="color: #ff0000;">"installr"</span><span style="color: #080;">)</span> <span style="color: #228b22;"># install </span>
setInternet2<span style="color: #080;">(</span>TRUE<span style="color: #080;">)</span>
installr<span style="color: #080;">::</span><span>updateR</span><span style="color: #080;">(</span><span style="color: #080;">)</span> <span style="color: #228b22;"># updating R.</span></pre>
</td>
</tr>
</tbody>
</table></div><p><span>Running &ldquo;updateR()&rdquo; will detect if there is a new R version available, and if so it will download+install it (etc.). There is also <a href="http://www.r-statistics.com/2015/06/a-step-by-step-screenshots-tutorial-for-upgrading-r-on-windows/" target="_blank">a&nbsp;step by step tutorial (with screenshots) on how to upgrade R on Windows, using the <em>installr</em></a>&nbsp;package. If you only see the option to upgrade to an older version of R, then change your mirror or try again in a few hours (it usually take around 24 hours for all CRAN mirrors to get the latest version of R).</span></p><p><em>I try to keep the <a href="https://github.com/talgalili/installr" target="_blank">installr</a> package updated and useful, so if you have any suggestions or remarks on the package &ndash; you are invited to <a href="https://github.com/talgalili/installr/issues" target="_blank">open an issue in the github page</a>.</em></p>]]></description>
	<dc:creator>Rahul Nayak</dc:creator>
</item>
<item>
	<guid isPermaLink="true">https://bioinformaticsonline.com/poll/view/27279/do-you-think-its-important-for-everyone-to-pass-binc-exam</guid>
	<pubDate>Wed, 11 May 2016 07:25:34 -0500</pubDate>
	<link>https://bioinformaticsonline.com/poll/view/27279/do-you-think-its-important-for-everyone-to-pass-binc-exam</link>
	<title><![CDATA[Do you think it's important for everyone to pass BINC exam?]]></title>
	<description><![CDATA[<p><span>The Department of Biotechnology (DBT), Government of India has instituted BINC examination with the objective of evaluating the Bioinformatics knowledge &amp; skills of students. Do you think it is important ?</span></p>]]></description>
	<dc:creator>Jit</dc:creator>
</item>

</channel>
</rss>