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	<title><![CDATA[BOL: Related items]]></title>
	<link>https://bioinformaticsonline.com/related/14302?offset=90</link>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</guid>
	<pubDate>Sat, 23 Jan 2021 06:07:50 -0600</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/42664/common-bioinformatics-interview-questions</link>
	<title><![CDATA[Common Bioinformatics Interview Questions !]]></title>
	<description><![CDATA[<p>The possibility of an interview for a bioinformatics position in the life sciences may be very disquieting, but the same concerns emerge time and again in my experience. So, it is exceedingly worthwhile to plan for future bioinformatics interview questions. Doing this will really give you the advantage in obtaining the position.</p><p>The following 5 questions are those that I have heard many times during the job-search process. There is no reason for not planning responses in such situations.</p><p><strong>1. Tell Us About Yourself</strong><br />This is a very typical opener in interviews. It's a perfect question to ask, and getting something planned will really help you concentrate and ease in the conversation. However, you need to make sure that your response is applicable to the job you're interviewing.<br />It's probably better to keep your answer professional. Try to include these in the answer as well: where did your love of science and bioinformatics come from? How the heck did you end up in this field? Why programming and scripting ?</p><p><strong>2. What is your plan for your bioinformatics career? / How do you look at yourself in five years? / How are your personal objectives to accomplish these goals / What are the plan for your research fundings ?</strong></p><p>Your CV/resume has already impressed the selection panel if you have been invited for an interview. The questions from the bioinformatics interview team provide an incentive for you to market yourself and illustrate the work in question with the most appropriate knowledge.</p><p><strong>3. What do you understand about the job description/What would your suggested research path be if you were a successful candidate?</strong><br />Summarize the specifics of the advertised bioinformatics position in your own words. Follow on with some suggestions of how you want to extend your research and create your own projects within the community.</p><p><strong>4. Will you work as a group or do you want to work on your own?</strong><br />This requirement can vary from jobs to job, so when addressing, be alert. A company/research PI may need a bioinformatician that is able to work on a single project autonomously, or they may need a person who can help direct and organize a team. In your response, refer to the job description.</p><p><strong>5. What particular methods have you used to date with your experiments?</strong><br />You might have experience with all the laboratory techniques described in the job description, but stress the ones you highly experienced with. Highlight your professional abilities and stress that you are extremely capable of mastering new techniques with others ...</p><p>At the end of the day, remember that you're questioning the jury as well as they're interviewing you. You will ought to think of any questions you would like the interview panel to pose. This indicates that you have done your homework and serious about the position.</p><p>All the best for your future job interview.</p>]]></description>
	<dc:creator>Jit</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/blog/view/44516/16srna-database-download</guid>
	<pubDate>Wed, 24 Apr 2024 04:33:15 -0500</pubDate>
	<link>https://bioinformaticsonline.com/blog/view/44516/16srna-database-download</link>
	<title><![CDATA[16sRNA Database Download]]></title>
	<description><![CDATA[<p>Downloading 16S rRNA databases can be crucial for various bioinformatics analyses, especially in microbiome research. However, it's important to note that databases can vary based on your specific needs, such as the taxonomic coverage you require or the type of analysis you're performing. Here's a general guideline on how you can obtain 16S rRNA databases:</p><ol>
<li>
<p><span>NCBI (National Center for Biotechnology Information)</span>:</p>
<ul>
<li>NCBI provides various databases related to genetic information, including 16S rRNA sequences.</li>
<li>You can access the 16S ribosomal RNA sequences from NCBI's Nucleotide database (<a href="https://www.ncbi.nlm.nih.gov/nucleotide/" target="_new">https://www.ncbi.nlm.nih.gov/nucleotide/</a>).</li>
<li>Perform a search using keywords like "16S rRNA" or specific bacterial names to find relevant sequences.</li>
<li>You can download sequences individually or in batches using the provided tools.</li>
</ul>
</li>
<li>
<p><span>GreenGenes</span>:</p>
<ul>
<li>GreenGenes is a widely used 16S rRNA gene sequence database.</li>
<li>You can access it at <a target="_new">http://greengenes.secondgenome.com/</a>.</li>
<li>GreenGenes provides precompiled databases for various purposes, including classification, alignment, and phylogenetic analysis.</li>
</ul>
</li>
<li>
<p><span>SILVA</span>:</p>
<ul>
<li>SILVA (<a href="https://www.arb-silva.de/" target="_new">https://www.arb-silva.de/</a>) is another comprehensive database for ribosomal RNA (rRNA) sequences.</li>
<li>It covers not only 16S rRNA but also other ribosomal RNA sequences.</li>
<li>SILVA provides precompiled databases for various purposes, including taxonomic classification and alignment.</li>
</ul>
</li>
<li>
<p><span>Ribosomal Database Project (RDP)</span>:</p>
<ul>
<li>RDP (<a target="_new">http://rdp.cme.msu.edu/</a>) is a curated database that offers 16S rRNA sequences.</li>
<li>It provides tools for sequence analysis and classification.</li>
<li>You can download sequences and taxonomy information from their website.</li>
</ul>
</li>
<li>
<p><span>QIIME (Quantitative Insights Into Microbial Ecology)</span>:</p>
<ul>
<li>QIIME (<a href="https://qiime2.org/" target="_new">https://qiime2.org/</a>) is a widely used bioinformatics platform for microbiome analysis.</li>
<li>It provides tools for analyzing microbial communities, including processing 16S rRNA sequences.</li>
<li>QIIME often includes its own preprocessed 16S rRNA databases that can be used for analysis within the platform.</li>
</ul>
</li>
</ol><p>Before downloading any database, make sure to read the terms of use and citation requirements, as some databases may have specific usage policies. Additionally, consider the compatibility of the database with your analysis pipeline and software tools.</p><p>&nbsp;</p><p>NCBI 16s RNA database location&nbsp;ftp://ftp.ncbi.nih.gov/blast/db/16SMicrobial.tar.gz</p>]]></description>
	<dc:creator>LEGE</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/24042/research-associate-bioinformatician-university-of-bristol</guid>
  <pubDate>Wed, 26 Aug 2015 05:46:29 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Associate Bioinformatician @ University of Bristol]]></title>
  <description><![CDATA[
<p>This 0.5 fte role will have specific responsibility for the bioinformatic side of a Health Innovation Challenged Fund (HICF) research project investigating the application of Next Generation Sequencing (NGS) technologies to the analysis of Minimal Residual Disease (MRD) in childhood Acute Lymphoblastic Leukaemia (ALL). The successful candidate will be responsible for designing and implementing an analysis pipeline primarily to fit with the clinical need, but with the capacity to answer innovative research questions.</p>

<p>For informal enquiries please contact Anne Walsh via email: anne.walsh@bristol.ac.uk.</p>

<p>Apply at http://www.bris.ac.uk/jobs/find/details.html?nPostingID=3639&amp;nPostingTargetID=13346&amp;option=28&amp;sort=DESC&amp;respnr=1&amp;ID=Q50FK026203F3VBQBV7V77V83&amp;JobNum=ACAD101624&amp;Resultsperpage=10&amp;lg=UK&amp;mask=uobext</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/44669/bioinformatician-at-qub-uk</guid>
  <pubDate>Tue, 01 Oct 2024 21:43:23 -0500</pubDate>
  <link></link>
  <title><![CDATA[Bioinformatician at QUB, UK]]></title>
  <description><![CDATA[
<p>The post-holder will work under the direction of the Precision Medicine Centre of Excellence's (PMC) Bioinformatics lead and collaborate closely with the Scientific and Clinical leads. The primary responsibilities will be to develop, validate and maintain data analysis pipelines and algorithms that enable the comprehensive analysis of genomic information derived from cancer specimens, within the context of clinical studies. The PMC is an ISO 15189:2012 accredited medical laboratory (Ref 20634), providing an integrated cancer diagnostic and clinical research service that combines high throughput genomics and digital pathology (www.qub.ac.uk/research-centres/PMC).</p>

<p>About the person:</p>

<p>Essential criteria:</p>

<p>Hold or be about to obtain* a PhD in Computational biology, Bioinformatics, computing science or related subjects. (*must be obtained within 3 months of the closing date for the post) or MSc equivalent with at least 3 years' work experience in a relevant role.<br />Significant relevant research experience in genomics or work experience in a relevant technical/scientific role.<br />Significant experience in managing and analysing NGS data and other big data.<br />Experience in developing and maintaining analysis pipelines.<br />Experience working with Linux/UNIX environments.<br />Proficiency with python, bash, R and/or equivalent languages.<br />To be successful at shortlisting stage, please ensure you clearly evidence in your application how you meet the essential and, where applicable, desirable criteria listed in the Candidate Information document linked on our website.</p>

<p>More at https://hrwebapp.qub.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.open</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/42804/one-year-position-for-a-bioinformatician-computational-biologist-in-population-genetics</guid>
  <pubDate>Fri, 05 Feb 2021 11:19:02 -0600</pubDate>
  <link></link>
  <title><![CDATA[One-year position for a bioinformatician / computational biologist in population genetics]]></title>
  <description><![CDATA[
<p>The successful candidate will work as support staff mainly in the development, application and maintenance of pipelines for handling large omics datasets (including whole-genome sequences, high-density genotypes and mRNA sequences). These pipelines cover pre-processing of data, statistical analyses and genome bioinformatics. The postholder will also provide support in producing high-level graphic representations of<br />these data and of results from their analysis.  Our team is part of UMR<br />7268 ADES research unit (Anthropologie bio-culturelle, Droit, Ethique<br />et Sant=E9), located at the Timone Faculty of Medicine (Aix-Marseille<br />University, 13005 Marseille). </p>

<p>JOB QUALIFICATION<br />- PhD/Engineer/MSc in bioinformatics, biostatistics, genetics/genomics<br />  or any related field.<br />- Advanced knowledge of Bash/Perl scripting and job management on a Unix<br />  HPC and in at least one basic language for data<br />  manipulation/statistics (such as R/Python/Matlab) are required.<br />- Knowledge of at least one programming language (e.g. C), experience<br />  processing -omics data or skills in advanced graphical representation<br />  of data would be a plus.</p>

<p>DURATION<br />1 year, not extensible</p>

<p>SALARY<br />Gross salary is commensurate with experience and grade (MSc from<br />1,882=80/month and PhD/equivalent from 2,099=80/month).</p>

<p>APPLICATIONS/OPENING<br />Please send a motivation letter, a CV and the names of two referees to<br />pierre.faux@univ-amu.fr. The expected starting date is April 1st, 2021;<br />the job offer will however remain opened until the position is filled.</p>

<p>Pierre Faux</p>
]]></description>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/videolist/watch/4155/genetics-for-fun-and-profit-andrew-hessel-at-tedxvilnius</guid>
	<pubDate>Sun, 01 Sep 2013 19:15:06 -0500</pubDate>
	<link>https://bioinformaticsonline.com/videolist/watch/4155/genetics-for-fun-and-profit-andrew-hessel-at-tedxvilnius</link>
	<title><![CDATA[Genetics for Fun and Profit: Andrew Hessel at TEDxVilnius]]></title>
	<description><![CDATA[<iframe width="" height="" src="https://www.youtube-nocookie.com/embed/A2h_JW7X_HE" frameborder="0" allowfullscreen></iframe>Andrew Hessel co-chairs the Bioinformatics and Biotechnology track at the Singularity University, an institution founded by futurist Ray Kurzweil and X Prize Foundation CEO Peter Diamandis, with sponsorship from world-leading organizations that include Google, Autodesk, and NASA. He is also the founder of the Pink Army Cooperative, a venture aiming to make open source personalized cancer therapies. His work has been featured in The New York Times, Futurist Magazine, H+, and Wired News.

In the spirit of ideas worth spreading, TEDx is a program of local, self-organized events that bring people together to share a TED-like experience. At a TEDx event, TEDTalks video and live speakers combine to spark deep discussion and connection in a small group. These local, self-organized events are branded TEDx, where x = independently organized TED event. The TED Conference provides general guidance for the TEDx program, but individual TEDx events are self-organized.* (*Subject to certain rules and regulations)]]></description>
	
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	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/14036/introduction-to-programming-write-short-programs-that-generate-graphics-and-animation</guid>
	<pubDate>Thu, 14 Aug 2014 23:29:04 -0500</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/14036/introduction-to-programming-write-short-programs-that-generate-graphics-and-animation</link>
	<title><![CDATA[Introduction to programming. Write short programs that generate graphics and animation.]]></title>
	<description><![CDATA[<p>Introduction to programming. Write short programs that generate graphics and animation.</p><p>http://funprogramming.org/</p>]]></description>
	<dc:creator>Ram Yash Pal</dc:creator>
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	<guid isPermaLink="true">https://bioinformaticsonline.com/fun/view/39329/you-cant-install-david-brownlee</guid>
	<pubDate>Wed, 01 May 2019 21:47:36 -0500</pubDate>
	<link>https://bioinformaticsonline.com/fun/view/39329/you-cant-install-david-brownlee</link>
	<title><![CDATA[You can't install David Brownlee ;-)]]></title>
	<description><![CDATA[<p>By mistake I ask cpan to install abs, and it return this message.</p><blockquote><p>jitendra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs&nbsp; [ 4:43AM]<br />Going to read '/home/jitendra/.cpan/Metadata'<br />&nbsp; Database was generated on Thu, 02 May 2019 00:08:06 GMT<br />Don't be silly, you can't install David Brownlee ;-)</p></blockquote>]]></description>
	<dc:creator>Jit</dc:creator>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/researchlabs/view/38418/charles-swanton-lab</guid>
  <pubDate>Tue, 11 Dec 2018 08:09:22 -0600</pubDate>
  <link></link>
  <title><![CDATA[CHARLES SWANTON LAB]]></title>
  <description><![CDATA[
<p>They are using the latest DNA sequencing technology to read the genetic makeup of cancer cells within tumours in ever greater detail, teasing out patterns of evolution (evolutionary rule books), cancer heterogeneity and working out what changes have happened as a tumour evolves. We’re also investigating the processes that cause mutations and accelerate tumour evolution and working out how they might be stopped. And we are running evolutionary clinical trials with immune and targeted therapies to bring the benefits of our work to patients as quickly as possible.</p>

<p>https://www.crick.ac.uk/research/labs/charles-swanton</p>
]]></description>
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  <guid isPermaLink='true'>https://bioinformaticsonline.com/opportunity/view/841/research-fellow</guid>
  <pubDate>Sat, 13 Jul 2013 11:23:20 -0500</pubDate>
  <link></link>
  <title><![CDATA[Research Fellow]]></title>
  <description><![CDATA[
<p>UNIVERSITY OF CALCUTTA</p>

<p>A walk-in-interview will be held on 15.7.2013 at 12 noon in the Department of Biophysics, Molecular Biology and Bioinformatics, 92 A.P.C Road, Kolkata-700 009 to select one trainee research fellow and two students under DIC. The positions are purely temporary and would be for a period of six months from the date of joining which may be extended by another six months subject to successful performance.</p>

<p>Qualification:</p>

<p>For the Trainee Research Fellow: Should have a master degree in Bioinformatics or allied subjects and should have biological database development experience. Must have at least one publication.</p>

<p>For the Students: Should have a master degree in Bioinformatics or allied subjects and should be proficient in C-programming language. Must be familiar with techniques of Developmental Biology.</p>

<p>The Trainee Research Fellow would be paid a consolidated sum of Rs 10000/- per month and the students would be paid a sum amount Rs. 7000/- per month during the tenure of the project.</p>

<p>Advertisement:<br />www.caluniv.ac.in/News%20&amp;%20Announcement/trainee_rf_DIC.pdf</p>
]]></description>
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